Jatropha Genome Database

JcCA0315721.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0315721.20 + phase: 0 
         (143 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC233676_41.1 hypothetical protein AC233676.2 159341-159811...    82   8e-17

>IMGA|AC233676_41.1 hypothetical protein AC233676.2 159341-159811 H
           EGN_Mt090430 20090702
          Length = 156

 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 62/122 (50%), Gaps = 12/122 (9%)

Query: 32  PQPSQRPLCVSQFALANYACSRMP---PSPASDIFFXXXXXXX---------XXXXXXXX 79
           P P+ RPLC  Q AL +YAC  +P    SP+S I                          
Sbjct: 35  PPPALRPLCAPQLALVSYACGMLPYTPGSPSSPILPPLSPSSSNDGGGHQSHHNHHHRHG 94

Query: 80  XXXXXXXXSAVENCCRWLSDVDNECVCDLLIRLPIFLARPAHQFTIVIGDTCTITFSCSG 139
                   +  +NCCRW   +D+ CVC++L+RLP FL RP H +++V G++CT+T+SC G
Sbjct: 95  HRHRHHDTTQEDNCCRWARALDSRCVCEILVRLPPFLIRPLHTYSVVFGESCTVTYSCGG 154

Query: 140 RV 141
            +
Sbjct: 155 PI 156