Jatropha Genome Database

JcCA0315581.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0315581.20 - phase: 0 
         (270 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g037350.1 Contains weak similarity to tail completion...   254   4e-68
IMGA|Medtr5g074990.1 hypothetical protein chr05_pseudomolecule_I...    53   1e-07

>IMGA|Medtr1g037350.1 Contains weak similarity to tail completion
           gi|5354213 from coliphage T4 gb|AF158101. ESTs
           gb|AA650799, gb|AA041054, gb|R29873, gb|AA712908 come
           from this gene., putative chr01_pseudomolecule_IMGAG_V3
           8755545-8759057 E EGN_Mt090430 20090702
          Length = 282

 Score =  254 bits (648), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 136/278 (48%), Positives = 173/278 (62%), Gaps = 15/278 (5%)

Query: 1   MGGHRAIEAAKTVIEVADVAWKAMEFTXXXXXXXXXXXXXXITHASI----------DEE 50
           M  H A+E AKTV+EVADVAW A+E+               +TH             D++
Sbjct: 1   MRTHNAVEMAKTVLEVADVAWTAVEYHHHHHRHHDPV----VTHDDKYDDKDNNCPSDQD 56

Query: 51  LESLRSENRCXXXXXXXXXXXXXXXXXXPCLLNDCPPDLHARLVATVDSEDFLARLKSLQ 110
           LE+L+ ENR                      L++CPPDLH RL ATV S+++L RLK LQ
Sbjct: 57  LEALKLENRRLRNLLDQNLKLLNNLSESNSFLSNCPPDLHVRLAATVRSDEYLTRLKVLQ 116

Query: 111 LASANISGIEFPFKEATGDDMHSAEMLINVSNEEPSWWVWVTEEMAPNNIEERSRIDNEN 170
             +A+  G +FPFKEAT  D  SA++LINV ++EPSWWVWV +E  P N EE S ID+E+
Sbjct: 117 EETAS-GGNQFPFKEATEVDYQSADILINVDSKEPSWWVWVADETDPINFEECSGIDDES 175

Query: 171 YXXXXXXXXXXXXXNFMAKCILSNPKAQKMTPEELQKSLEKALEGVSKWEKILNIWHAGQ 230
           Y             NFMA+CI+SNPKA+ M+PEELQ +L KA  G SK EK+L+IW AG+
Sbjct: 176 YLIISEEHVVDGVANFMARCIMSNPKARNMSPEELQNNLSKAFAGTSKLEKVLDIWAAGK 235

Query: 231 LFYTLATWGLALWGLYRTRSILKLAAKGVHKTSKVVLK 268
           LFY L+TWGLAL GLY+TRS+LK+AAKGVH   K+ LK
Sbjct: 236 LFYALSTWGLALAGLYQTRSLLKVAAKGVHSGGKLALK 273


>IMGA|Medtr5g074990.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 27188527-27183736 E
           EGN_Mt090430 20090702
          Length = 223

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 48/104 (46%)

Query: 167 DNENYXXXXXXXXXXXXXNFMAKCILSNPKAQKMTPEELQKSLEKALEGVSKWEKILNIW 226
           D E+Y              FMA  +LS  K + +TP +LQ +L K      K  K+   W
Sbjct: 120 DEEDYVLVRQDDIVDGIACFMAAYLLSLKKTKDLTPSQLQDALSKTFSVKKKKGKLRKAW 179

Query: 227 HAGQLFYTLATWGLALWGLYRTRSILKLAAKGVHKTSKVVLKAL 270
              ++ Y +A+WG    G+Y+   IL+ A K    + +V+ K L
Sbjct: 180 DGSKVIYNVASWGATAIGIYQNPVILRAATKAFWTSCQVISKLL 223