Jatropha Genome Database

JcCA0315371.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0315371.20 - phase: 0 /partial
         (175 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g138610.1 Helix-turn-helix, AraC type chr03_pseudomol...   162   1e-40
IMGA|Medtr4g041850.1 Helix-turn-helix, AraC type chr04_pseudomol...   162   1e-40

>IMGA|Medtr3g138610.1 Helix-turn-helix, AraC type
           chr03_pseudomolecule_IMGAG_V3 35458788-35461465 E
           EGN_Mt090430 20090702
          Length = 286

 Score =  162 bits (409), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 87/166 (52%), Positives = 116/166 (69%), Gaps = 7/166 (4%)

Query: 1   VAAISEQASESTGEAAKSEENPSDTLEWKSFDIRAVVSATEDLLLFILSEKGSRVRVFLV 60
           VAAISEQASE T E    E+  S ++ WKSFD+ AVV +TEDLLLFILS KG RVRVFL+
Sbjct: 126 VAAISEQASELT-EDPNPEKFSSPSV-WKSFDMHAVVDSTEDLLLFILSVKGQRVRVFLL 183

Query: 61  RDIIKVADVFLRDKIVGCILDQKREGNEASKSEGHSTFMRVVNGFQYLRQAVKLAPELWT 120
           RDI++ ADVFL+D+++ C L+  R+     + E      R    F Y+R+ VKLAP  WT
Sbjct: 184 RDIVEAADVFLQDEVIDCALNGNRQDQRILRFEE-----RTGKSFHYIREVVKLAPGEWT 238

Query: 121 AMLIRMALKPEFHSFILDIMSALVVHFNHKVPETSWVFMSRLLHKL 166
            ML+RMA+KPE H F +DI+SAL +  +H++   +W+++S LLHKL
Sbjct: 239 TMLLRMAVKPEVHIFTIDIISALALRSSHRLQVAAWLYLSILLHKL 284


>IMGA|Medtr4g041850.1 Helix-turn-helix, AraC type
           chr04_pseudomolecule_IMGAG_V3 9991461-9988783 E
           EGN_Mt090430 20090702
          Length = 286

 Score =  162 bits (409), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 87/166 (52%), Positives = 116/166 (69%), Gaps = 7/166 (4%)

Query: 1   VAAISEQASESTGEAAKSEENPSDTLEWKSFDIRAVVSATEDLLLFILSEKGSRVRVFLV 60
           VAAISEQASE T E    E+  S ++ WKSFD+ AVV +TEDLLLFILS KG RVRVFL+
Sbjct: 126 VAAISEQASELT-EDPNPEKFSSPSV-WKSFDMHAVVDSTEDLLLFILSVKGQRVRVFLL 183

Query: 61  RDIIKVADVFLRDKIVGCILDQKREGNEASKSEGHSTFMRVVNGFQYLRQAVKLAPELWT 120
           RDI++ ADVFL+D+++ C L+  R+     + E      R    F Y+R+ VKLAP  WT
Sbjct: 184 RDIVEAADVFLQDEVIDCALNGNRQDQRILRFEE-----RTGKSFHYIREVVKLAPGEWT 238

Query: 121 AMLIRMALKPEFHSFILDIMSALVVHFNHKVPETSWVFMSRLLHKL 166
            ML+RMA+KPE H F +DI+SAL +  +H++   +W+++S LLHKL
Sbjct: 239 TMLLRMAVKPEVHIFTIDIISALALRSSHRLQVAAWLYLSILLHKL 284