Jatropha Genome Database

JcCA0315091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0315091.10 + phase: 2 /partial
         (121 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g151400.1 Cellular retinaldehyde binding/alpha-tocoph...    89   7e-19

>IMGA|Medtr3g151400.1 Cellular retinaldehyde
           binding/alpha-tocopherol transport; Cellular
           retinaldehyde-binding/triple function, N-terminal
           chr03_pseudomolecule_IMGAG_V3 40138254-40135982 E
           EGN_Mt090430 20090702
          Length = 272

 Score = 88.6 bits (218), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 60/106 (56%)

Query: 8   GNEKLIGILDLQQITYRNTDARGLITGFQFLQAYYPERLAKCFILHMPXXXXXXXXXXXX 67
           G EK + I D++   Y N+D RG +     LQ YYPERL K FI+H P            
Sbjct: 166 GEEKFVSIADIKGWGYANSDIRGYLGALTILQDYYPERLGKLFIVHAPYMFMKVWKIIYP 225

Query: 68  XLEKATQEKIVIVSNEEERENFMKEIGEEILPEEYGGQAKLVPIQD 113
            ++  T++KIV V N++ +   ++EI E  LPE YGG+  LVPIQD
Sbjct: 226 FIDDNTKKKIVFVENKKLKATLLEEIDESQLPEIYGGKLPLVPIQD 271