Jatropha Genome Database

JcCA0314681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0314681.10 - phase: 0 
         (187 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g119850.1 hypothetical protein chr08_pseudomolecule_I...   211   2e-55

>IMGA|Medtr8g119850.1 hypothetical protein
           chr08_pseudomolecule_IMGAG_V3 27281903-27284242 E
           EGN_Mt090430 20090702
          Length = 182

 Score =  211 bits (537), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 101/182 (55%), Positives = 125/182 (68%), Gaps = 6/182 (3%)

Query: 12  MRQRHSQGYASGGDDLEDDACXXXXXXXXXXXXXXXWVEIVENVLWIASAIFIVYFGDRH 71
           MRQRHSQGYAS GDDLEDDAC               W+E++EN LW+ASA FI+YFGD+H
Sbjct: 1   MRQRHSQGYASSGDDLEDDACSRQRAFLPPSPPKKTWIELLENFLWLASAAFILYFGDQH 60

Query: 72  SNLIYLLWHDERIRRLPLYLGMVGAGVNLVIFLYTSMFTWGVRRFDE-----KWELSSIS 126
           SN IYLL HD+RIRRLPLYLGM+G G+N +IF+YT++  W VRRFDE     KWE++SI+
Sbjct: 61  SNFIYLLCHDDRIRRLPLYLGMIGIGLNTLIFVYTTILAWSVRRFDEKWGLMKWEITSIT 120

Query: 127 ALPLVTLLGLVSFCLLSFALWPVWSXXXXXXXXXXXMASMVICPHIMI-VTFRQQNDTFR 185
            LP  T  G+ SFCL +FALWP+WS           MA MV+ P+++  +  R QND FR
Sbjct: 121 VLPFATGFGITSFCLFTFALWPIWSFLTIPLLFTLFMACMVVIPYLIFGILGRPQNDEFR 180

Query: 186 ID 187
            D
Sbjct: 181 TD 182