Jatropha Genome Database

JcCA0314481.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0314481.20 - phase: 1 /partial
         (505 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g133370.1 NAD(P) transhydrogenase, alpha subunit; Sac...   651   0.0  
IMGA|Medtr8g133370.2 NAD(P) transhydrogenase, alpha subunit; Sac...    99   6e-21

>IMGA|Medtr8g133370.1 NAD(P) transhydrogenase, alpha subunit;
            Saccharopine dehydrogenase; LOR/SDH bifunctional enzyme
            conserved region chr08_pseudomolecule_IMGAG_V3
            31761610-31770729 E EGN_Mt090430 20090702
          Length = 1065

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/528 (61%), Positives = 394/528 (74%), Gaps = 31/528 (5%)

Query: 3    NKEANKISLKVGKIQENDVKKDCDTKRKTGVLIIGAGRVCRPAVEFLASIGSISSHECYK 62
            N+ ++KISL +GK+QEN ++K+ D K+K  VLI+GAGRVC+PA + L+S GS    + YK
Sbjct: 544  NQNSSKISLTLGKVQENGMEKESDPKKKAAVLILGAGRVCQPAAQMLSSFGS---SQWYK 600

Query: 63   ACLDTDFEEQNDVQVFVASLYLKDAEEIIEGIPNATAVQLDVMDNESLCKYISQAEVVVS 122
              L+ DFE+Q DV V + SLYLKDAE+I+EGIPN T +QLDVMD+ SL K ISQ +VV+S
Sbjct: 601  TLLEDDFEDQIDVDVILGSLYLKDAEQIVEGIPNVTGIQLDVMDSASLFKSISQVDVVIS 660

Query: 123  LLPPSCHIIIANACIKLSKHLVTASYIDDSMSALDEKAKAADITILGEMGMDPGIDHMMA 182
            LLPPSCHII+ANACI+L KHLVTASY+D SMS LD+KAK A ITILGEMG+DPGIDHMMA
Sbjct: 661  LLPPSCHIIVANACIELRKHLVTASYVDSSMSMLDDKAKDAGITILGEMGLDPGIDHMMA 720

Query: 183  MKMINQAHVRKGRLKSFTSYCGXXXXXXXXXXXXXYK--------------------FSW 222
            MKMI++AH++KG++KSFTSYCG             YK                    FSW
Sbjct: 721  MKMIDEAHMQKGKIKSFTSYCGGLPSPEDANNPLAYKFKLLFHLVGIAIMAHLVAIYFSW 780

Query: 223  SPAGVIRAGRNPATYRLNGEIVHIDGDSLYDSAFKLRIPHLPAFALECLPNRDSLVYEKV 282
            +P G IRAGRNPATY+ +GE VHIDG++LYDSA +LRIP  PAFALECLPNR+SL+Y  +
Sbjct: 781  NPVGAIRAGRNPATYKYHGETVHIDGNNLYDSATRLRIPDFPAFALECLPNRNSLIYGDL 840

Query: 283  YGI-EEASTIFRGTLRYEGFGEIMGILARIGFFRTEPHPVLRCERRPTFKTFLCELLKIP 341
            YGI  EA+TIFRGTLR   F EIM  L+RIG F  E H +L+ E RPTF+ F+ +LLKI 
Sbjct: 841  YGIGSEATTIFRGTLR---FSEIMATLSRIGLFNNEAHTILKNEERPTFRKFMFDLLKIV 897

Query: 342  GENLSG----EKDITENIVTLGHCXXXXXXXXXXXXIIFLGFDEQTEIPASCRSAFDVTC 397
             ++  G    E+DITE I+TLGHC            IIFLG  +QTEIPASC+SAFDV C
Sbjct: 898  RKDTDGALMREEDITEKILTLGHCKDQRSAMMTAKTIIFLGLLDQTEIPASCQSAFDVAC 957

Query: 398  YRMEERLVYSSTEQDMVLLHHEIVVEFPDGQRPERHSATLLEFGTSKNGKTVTAMALTVG 457
            +RMEERL YSSTE+DMVLLHHE+ +E+PD +  E+H ATLLEFG   +GKT TAMALTVG
Sbjct: 958  FRMEERLSYSSTEKDMVLLHHEVEIEYPDSKITEKHRATLLEFGKIIDGKTTTAMALTVG 1017

Query: 458  IPAAIGAXXXXENKIKSRGVLRPTEPEVYMPALEILQAHGIKLIEKVE 505
            IPAA+GA     NKI++RGVLRP +PEVY PAL+I+QA+GIKLIEK E
Sbjct: 1018 IPAAVGALLLLTNKIQTRGVLRPIQPEVYTPALDIIQAYGIKLIEKNE 1065


>IMGA|Medtr8g133370.2 NAD(P) transhydrogenase, alpha subunit;
           Saccharopine dehydrogenase; LOR/SDH bifunctional enzyme
           conserved region chr08_pseudomolecule_IMGAG_V3
           31761610-31767071 E EGN_Mt090430 20090702
          Length = 636

 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 47/87 (54%), Positives = 65/87 (74%), Gaps = 3/87 (3%)

Query: 3   NKEANKISLKVGKIQENDVKKDCDTKRKTGVLIIGAGRVCRPAVEFLASIGSISSHECYK 62
           N+ ++KISL +GK+QEN ++K+ D K+K  VLI+GAGRVC+PA + L+S G   S + YK
Sbjct: 544 NQNSSKISLTLGKVQENGMEKESDPKKKAAVLILGAGRVCQPAAQMLSSFG---SSQWYK 600

Query: 63  ACLDTDFEEQNDVQVFVASLYLKDAEE 89
             L+ DFE+Q DV V + SLYLKDAE+
Sbjct: 601 TLLEDDFEDQIDVDVILGSLYLKDAEQ 627