Jatropha Genome Database

JcCA0314481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0314481.10 + phase: 0 
         (355 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g133390.1 tac7077, putative chr08_pseudomolecule_IMGA...   360   e-100
IMGA|Medtr2g052340.1 tac7077, putative chr02_pseudomolecule_IMGA...   348   3e-96
IMGA|Medtr8g133390.2 tac7077, putative chr08_pseudomolecule_IMGA...   165   3e-41

>IMGA|Medtr8g133390.1 tac7077, putative
           chr08_pseudomolecule_IMGAG_V3 31778228-31774009 E
           EGN_Mt090430 20090702
          Length = 334

 Score =  360 bits (924), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/329 (59%), Positives = 229/329 (69%), Gaps = 34/329 (10%)

Query: 55  SSSIIPFIKRTTVSIDNTGSASVG-----------------FRINR----GRGVCLTVIG 93
           S ++  F+   T+ I+N  + S+G                 F +NR    GR  C     
Sbjct: 7   SENLARFLYHKTLHINNPMAYSIGYVDPCSHLSKVYANVFDFGVNRRFEFGRKNCGFYTS 66

Query: 94  CSDSHKP-PRAVAAPQNQLVREFENRLEDGSSSKTSARYIN-----GHETCQGGKPLGFP 147
            S+S +   RA A P     R F + LE G+S    A  I      G        P  F 
Sbjct: 67  ASNSSRFFVRANARP-----RGFASDLERGNSVSGDATAIKVDNDIGGLNGSSTTPCCFR 121

Query: 148 DYPLTGKIVVAVDVDEVLGNFVSALNRFIADRYSSNHSVAEYHVYEFFKIWKCSHDEANI 207
           D  L+ K+VVAVDVDEVLGNFVSALN++IAD+YSSN+SV+EYHVYEFFKIW CS DEA+I
Sbjct: 122 D-RLSEKLVVAVDVDEVLGNFVSALNKYIADQYSSNYSVSEYHVYEFFKIWNCSRDEADI 180

Query: 208 RVHEFFKTSYFKSGIYPIPGAQKVLHKLSRLCNLSVVTSRQNVIKDHTIEWIEKHYPGVF 267
           RVHEFFKT YFKSGI+P+PGAQ  + KLSR  NLS+VTSRQNVIKDHTIEWIEK++PG+F
Sbjct: 181 RVHEFFKTPYFKSGIHPLPGAQTAIQKLSRFFNLSIVTSRQNVIKDHTIEWIEKNFPGLF 240

Query: 268 HEIHFGNHFALDGESRPKSEICRTLGATVLIDDNPRYAIECAEAGIKVLLFDYENSYPWC 327
           HEIHFGNHFALDG SRPKSEICR+L A VLIDDNPRYAIECAE GIKVLLFDYENSYPW 
Sbjct: 241 HEIHFGNHFALDGISRPKSEICRSLNAKVLIDDNPRYAIECAEVGIKVLLFDYENSYPWS 300

Query: 328 KTDLV-RHPLVTKVHNWEQVEQQLISWIS 355
           K +LV  HPLVTKV NW +VEQQL+S I+
Sbjct: 301 KNELVDEHPLVTKVKNWTEVEQQLMSLIA 329


>IMGA|Medtr2g052340.1 tac7077, putative
           chr02_pseudomolecule_IMGAG_V3 14181567-14177114 E
           EGN_Mt090430 20090702
          Length = 303

 Score =  348 bits (892), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 165/221 (74%), Positives = 188/221 (85%), Gaps = 4/221 (1%)

Query: 139 QGG---KPLGFPDYPLTGKIVVAVDVDEVLGNFVSALNRFIADRYSSNHSVAEYHVYEFF 195
           QGG   +   +PD   + K+VVAVDVDEVLGNFVSALN+FIADRYSSN+SV+EYHVYEFF
Sbjct: 82  QGGSHNRSFCYPDQKFSHKLVVAVDVDEVLGNFVSALNKFIADRYSSNYSVSEYHVYEFF 141

Query: 196 KIWKCSHDEANIRVHEFFKTSYFKSGIYPIPGAQKVLHKLSRLCNLSVVTSRQNVIKDHT 255
           KIW CS DEAN RVHEFF+T YFKSGI PIPGAQ  L KLSR C+LS+VTSRQN IKDHT
Sbjct: 142 KIWNCSRDEANSRVHEFFETPYFKSGIQPIPGAQMALQKLSRFCDLSIVTSRQNAIKDHT 201

Query: 256 IEWIEKHYPGVFHEIHFGNHFALDGESRPKSEICRTLGATVLIDDNPRYAIECAEAGIKV 315
           IEWIE ++ G+F EIHFGNHFALDG SRPKSEICR+L A VLIDDNPRYA+ECAEAGI+V
Sbjct: 202 IEWIENNFSGLFDEIHFGNHFALDGVSRPKSEICRSLNAKVLIDDNPRYAMECAEAGIRV 261

Query: 316 LLFDYENSYPWCKTDLV-RHPLVTKVHNWEQVEQQLISWIS 355
           LLFDYENSYPW KT+   +HPLV KV NW++VEQ+L+S I+
Sbjct: 262 LLFDYENSYPWSKTEFAYQHPLVHKVENWDEVEQELMSLIA 302


>IMGA|Medtr8g133390.2 tac7077, putative
           chr08_pseudomolecule_IMGAG_V3 31778228-31774009 E
           EGN_Mt090430 20090702
          Length = 230

 Score =  165 bits (418), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 105/218 (48%), Positives = 129/218 (59%), Gaps = 33/218 (15%)

Query: 55  SSSIIPFIKRTTVSIDNTGSASVG-----------------FRINR----GRGVCLTVIG 93
           S ++  F+   T+ I+N  + S+G                 F +NR    GR  C     
Sbjct: 7   SENLARFLYHKTLHINNPMAYSIGYVDPCSHLSKVYANVFDFGVNRRFEFGRKNCGFYTS 66

Query: 94  CSDSHKP-PRAVAAPQNQLVREFENRLEDGSSSKTSARYIN-----GHETCQGGKPLGFP 147
            S+S +   RA A P     R F + LE G+S    A  I      G        P  F 
Sbjct: 67  ASNSSRFFVRANARP-----RGFASDLERGNSVSGDATAIKVDNDIGGLNGSSTTPCCFR 121

Query: 148 DYPLTGKIVVAVDVDEVLGNFVSALNRFIADRYSSNHSVAEYHVYEFFKIWKCSHDEANI 207
           D  L+ K+VVAVDVDEVLGNFVSALN++IAD+YSSN+SV+EYHVYEFFKIW CS DEA+I
Sbjct: 122 D-RLSEKLVVAVDVDEVLGNFVSALNKYIADQYSSNYSVSEYHVYEFFKIWNCSRDEADI 180

Query: 208 RVHEFFKTSYFKSGIYPIPGAQKVLHKLSRLCNLSVVT 245
           RVHEFFKT YFKSGI+P+PGAQ  + KLSR  NLS+VT
Sbjct: 181 RVHEFFKTPYFKSGIHPLPGAQTAIQKLSRFFNLSIVT 218