Jatropha Genome Database

JcCA0314181.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0314181.20 - phase: 0 /partial
         (392 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g103180.1 Dihydroxy-acid and 6-phosphogluconate dehyd...   640   0.0  

>IMGA|Medtr2g103180.1 Dihydroxy-acid and 6-phosphogluconate
           dehydratase chr02_pseudomolecule_IMGAG_V3
           23921544-23913653 E EGN_Mt090430 20090702
          Length = 598

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/392 (80%), Positives = 341/392 (86%)

Query: 1   VYGEYVNGSISDEGRKNVVRNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAESP 60
           +YGEYV+GSISDE R+NV+RNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSS PAE P
Sbjct: 207 IYGEYVSGSISDEHRQNVIRNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSTPAEDP 266

Query: 61  LKLDECRLAGKYLLELLKMDLKPRDIITRQSLRNAMVIVMALGGSTNAVLHLIAIARSVG 120
           LKLDECRLAGKYLLELLKMDLKPRDIITR+SLRNAMVIVMALGGSTNAVLHLIAIA+SVG
Sbjct: 267 LKLDECRLAGKYLLELLKMDLKPRDIITRKSLRNAMVIVMALGGSTNAVLHLIAIAKSVG 326

Query: 121 LELKLDDFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVLRYLLERGFLDGDCLTVTG 180
           +EL LDDFQKVSDEVPF+ADLKPSGKYVMEDVHKIGGTPAV+RYLLE+GFLDGDC+TVTG
Sbjct: 327 IELTLDDFQKVSDEVPFIADLKPSGKYVMEDVHKIGGTPAVIRYLLEQGFLDGDCMTVTG 386

Query: 181 KTLAENVQNCPPLSEGQDIIRSLENPIKKTGHIQILRGNLAPEGSVAKITGKEGLYFSGP 240
           KTLAEN +  PPLSEGQ+IIR +ENPIKKT HIQIL GNLAP+GSVAKITGKEGLYFSGP
Sbjct: 387 KTLAENAELFPPLSEGQEIIRPIENPIKKTAHIQILYGNLAPQGSVAKITGKEGLYFSGP 446

Query: 241 ALVFEGEEAMIRAITENPKNFKGKVVVIRXXXXXXXXXXXXXLTPTSAIMGAGLGKDCAL 300
           ALVFEGEEAMI AI+ENP +FKGKVV+IR             LTPTSAIMGAGLGKD AL
Sbjct: 447 ALVFEGEEAMIAAISENPLSFKGKVVIIRGEGPKGGPGMPEMLTPTSAIMGAGLGKDVAL 506

Query: 301 LTDGRXXXXXXXXXXXXXCPEAQEGGPIGLLRNGDTIKIDVQERRIDVELTDKEMEERRK 360
           LTDGR             CPEAQEGGPIGL++NGD I +DV+ +RIDV ++D+EME R+K
Sbjct: 507 LTDGRFSGGSHGFVVGHICPEAQEGGPIGLVQNGDVINVDVKNKRIDVIVSDEEMEARKK 566

Query: 361 NWSPPPYKATCGVLYKYIKNVCSASRGCVTDE 392
            WS PPYKA  GVLYKYIKNV  AS GCVTDE
Sbjct: 567 KWSAPPYKANQGVLYKYIKNVKPASSGCVTDE 598