Jatropha Genome Database

JcCA0314071.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0314071.20 - phase: 1 /pseudo/partial
         (169 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g112840.1 nuclear protein ZAP-related, putative chr08...   119   8e-28
IMGA|Medtr8g112830.1 nuclear protein ZAP-related, putative chr08...    93   5e-20

>IMGA|Medtr8g112840.1 nuclear protein ZAP-related, putative
           chr08_pseudomolecule_IMGAG_V3 25485768-25486595 E
           EGN_Mt090430 20090702
          Length = 96

 Score =  119 bits (298), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 59/90 (65%), Positives = 73/90 (81%), Gaps = 1/90 (1%)

Query: 79  SVRWSDQVGNTGFSIGAAKKAQMLSLVIGPGAGYNLKSNPLPEDEAITTAKAESRRQSAF 138
           S++ S QVG TGFSIG A+K   LSLVIGPGAGYNLKSNPLP++E+ T    E++++S F
Sbjct: 8   SLQPSFQVGKTGFSIGTARKVTTLSLVIGPGAGYNLKSNPLPKEESPTRNSVETKKRSTF 67

Query: 139 QERLRAEHESFKAVFDKRKRRIGRLDLEEE 168
           QER+RAE ESFKAVFD R+ RIG LD+EE+
Sbjct: 68  QERIRAERESFKAVFDGRRPRIG-LDVEED 96


>IMGA|Medtr8g112830.1 nuclear protein ZAP-related, putative
           chr08_pseudomolecule_IMGAG_V3 25482402-25485766 E
           EGN_Mt090430 20090702
          Length = 176

 Score = 93.2 bits (230), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 47/67 (70%), Positives = 54/67 (80%), Gaps = 2/67 (2%)

Query: 20  KDGKRWGVEEDHPTQGVKELGKSKWSNDLDEDDIEGSERMKGNLNALSGLIQAYGKQGKS 79
           KDGKRW  EE+HPT+ V+ELGKSKWS D  EDDI+ +E MKGN+NALSGLI  YGK+ KS
Sbjct: 112 KDGKRWDAEEEHPTE-VRELGKSKWSEDF-EDDIDQTEGMKGNINALSGLIHQYGKERKS 169

Query: 80  VRWSDQV 86
           V W DQV
Sbjct: 170 VHWGDQV 176