Jatropha Genome Database

JcCA0313951.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313951.20 + phase: 0 /pseudo
         (171 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g010530.1 Vacuolar sorting protein 9 chr03_pseudomole...   174   2e-44

>IMGA|Medtr3g010530.1 Vacuolar sorting protein 9
           chr03_pseudomolecule_IMGAG_V3 1862449-1865027 H
           EGN_Mt090430 20090702
          Length = 211

 Score =  174 bits (441), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 77/134 (57%), Positives = 101/134 (75%)

Query: 11  HDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSALVQDFLAKMEAAFRAHPLWAGC 70
           HDFL RMR PS+ D V++IKSFIVSFS   P PE D   VQDF   ME A R HPLWA  
Sbjct: 14  HDFLHRMRHPSSLDLVRAIKSFIVSFSFYQPKPENDGRRVQDFFLSMEVAIRNHPLWATA 73

Query: 71  SDEELESAGEGLEKYVMTKLFTRVFASIPDDVKVDEQLSEKMSLIQQFIRPENLDIKPTF 130
           ++E+++ A EGLEKY+MTKLF+R FA+ P+D K+D ++SEK+SL+Q F++PE+LDI P  
Sbjct: 74  TEEDIDCAMEGLEKYIMTKLFSRTFAASPEDAKIDHEISEKISLLQTFLKPEHLDIPPVL 133

Query: 131 QNETSWLVSRKDIQ 144
            NE SWL++ K++Q
Sbjct: 134 HNEASWLLAEKELQ 147