Jatropha Genome Database

JcCA0313811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313811.10 - phase: 0 /partial
         (169 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC234842_3.1 WD40 repeat AC234842.1 17142-14392 E EGN_Mt090...   198   1e-51

>IMGA|AC234842_3.1 WD40 repeat AC234842.1 17142-14392 E EGN_Mt090430
           20090702
          Length = 482

 Score =  198 bits (503), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 100/158 (63%), Positives = 123/158 (77%), Gaps = 14/158 (8%)

Query: 1   VPEESRLIFRASASSLECCCFIDNDEFLSGSDDGNIEVWGMQKKKPVYIVRNAHALFTDN 60
           V EESRL+FRA ASSLECCCF++N+EFLSGSDDG+IE+WG  +KKP++I+RNAHAL TD+
Sbjct: 322 VHEESRLVFRAPASSLECCCFVNNEEFLSGSDDGSIELWGAVRKKPIHILRNAHALLTDS 381

Query: 61  TNLEQKE-----NGSIFNG-----DKAC----SWVSSVTVCRGSDLAASGAGNGSVHLWA 106
              +Q +     NG++ NG     +  C    SWVS+VTVCR SDLAASGAGNG V LW 
Sbjct: 382 KKSDQNDSERLPNGNLENGHHHPENHHCSSVHSWVSAVTVCRNSDLAASGAGNGFVRLWT 441

Query: 107 IESAPACIRPLYDVPLVGFVNSLAFSKSGEFLVAGVGQ 144
           IE+    I+PL++VPLVGFVNSLAF+KS +FLVAGVGQ
Sbjct: 442 IENETKDIKPLHNVPLVGFVNSLAFAKSAKFLVAGVGQ 479