Jatropha Genome Database

JcCA0313541.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313541.20 - phase: 0 /pseudo
         (469 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g137170.1 Acetolactate synthase, small subunit chr04_...   330   1e-90

>IMGA|Medtr4g137170.1 Acetolactate synthase, small subunit
           chr04_pseudomolecule_IMGAG_V3 33711444-33718733 E
           EGN_Mt090430 20090702
          Length = 441

 Score =  330 bits (845), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 166/259 (64%), Positives = 195/259 (75%), Gaps = 12/259 (4%)

Query: 60  KGQWHTISVFIGDESGIINRIAGVFARRGYNIESLAVGLNKDKALFTIVVRGTDKVLQQV 119
           K + HTISVF+GDESG+INRIAGVFARRGYNIESLAVGLN+D+ALFTIVV GTD+VL+QV
Sbjct: 72  KVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNQDRALFTIVVSGTDRVLRQV 131

Query: 120 IEQLNKLVNVIKVEDISREPQVERELMLLKLNVDPSTHPEIMXLVDIFRTKVVDISEHTL 179
           +EQL KLVNV+KVED+SREPQVERELML+K++ DP    EI  LVD FR K+VDISEH++
Sbjct: 132 VEQLQKLVNVLKVEDLSREPQVERELMLVKVHADPQNRAEIKWLVDTFRAKIVDISEHSV 191

Query: 180 TIEVTGDPGKMAAVLRNLSNFRIEELT----IALRRERMRETAPFWRFSAASYPDLERTQ 235
           TIEVTGDPGKM AV RN   F I+E+     IALRRE+M  +APFWR+SAASYPDLE   
Sbjct: 192 TIEVTGDPGKMVAVQRNFGKFGIKEIARTGKIALRREKMGASAPFWRYSAASYPDLEGKT 251

Query: 236 PGDAFXXXXXXXXXXXXXXXXXXXXXXXXXXDVYPVEPYDDYSMNQVLDAHWGVLYDEDS 295
             +A                           DVYP+EP D +++NQVLDA WG L DED+
Sbjct: 252 AINAL--------VGAKNVNPVDKTDTPVGGDVYPIEPSDSFTVNQVLDAQWGFLNDEDT 303

Query: 296 SGSQSHTLSMLVNDSPGVL 314
           SG +SHTLSMLVND+PGVL
Sbjct: 304 SGIRSHTLSMLVNDAPGVL 322



 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/121 (45%), Positives = 87/121 (71%), Gaps = 2/121 (1%)

Query: 64  HTISVFIGDESGIINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVRGTDKVLQQVIE 121
           HT+S+ + D  G++N + GVFARRGYNI+SLAVG ++ + +   T VV GTD+ + ++++
Sbjct: 309 HTLSMLVNDAPGVLNIVTGVFARRGYNIQSLAVGHSEVEGISRLTTVVPGTDESISKLVQ 368

Query: 122 QLNKLVNVIKVEDISREPQVERELMLLKLNVDPSTHPEIMXLVDIFRTKVVDISEHTLTI 181
           QL KLV + +V DI+  P  ERELML+K+ V+ +   +++ +  IFR K VD+S+HT+T+
Sbjct: 369 QLYKLVELREVRDITHLPFAERELMLIKIAVNAAARRDVLDIASIFRAKAVDVSDHTITL 428

Query: 182 E 182
           E
Sbjct: 429 E 429