Jatropha Genome Database

JcCA0313461.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313461.20 + phase: 0 /partial
         (80 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g064780.1 Uncharacterized protein At4g15970, related ...   105   6e-24
IMGA|Medtr6g090280.1 Uncharacterized protein At4g15970, putative...    65   7e-12
IMGA|Medtr1g039640.1 Uncharacterized protein At4g15970, putative...    64   2e-11

>IMGA|Medtr1g064780.1 Uncharacterized protein At4g15970, related
           chr01_pseudomolecule_IMGAG_V3 12661089-12662984 E
           EGN_Mt090430 20090702
          Length = 360

 Score =  105 bits (262), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 54/77 (70%), Positives = 62/77 (80%), Gaps = 2/77 (2%)

Query: 6   DELEMALQKASMPN-KTVIIAVLNKAYVEPSVKSET-TMLDLFLESFWYGEDTRSLLDHL 63
           D L+ AL KASM N KTVIIA++NKAYVE  VK +  TM DLFL SFW GE TRSL+D+L
Sbjct: 62  DGLDKALAKASMRNYKTVIIAIINKAYVEQDVKGDAITMFDLFLSSFWLGEGTRSLIDNL 121

Query: 64  LVVAVDQTAYDRCKFKR 80
           L+VAVDQTAYDRC+F R
Sbjct: 122 LIVAVDQTAYDRCQFLR 138


>IMGA|Medtr6g090280.1 Uncharacterized protein At4g15970, putative
           chr06_pseudomolecule_IMGAG_V3 19151403-19157947 E
           EGN_Mt090430 20090702
          Length = 362

 Score = 65.1 bits (157), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 6/71 (8%)

Query: 7   ELEMALQKASMPNKTVIIAVLNKAYVEPSVKSETTMLDLFLESFWYG-EDTRSLLDHLLV 65
           +L+  L++ASM +KTVII  LN A+ EP      ++ D FLESF  G   T+ LLDHL+V
Sbjct: 84  KLKSVLKQASMKDKTVIITTLNDAWAEPG-----SIFDQFLESFQIGGNQTQKLLDHLVV 138

Query: 66  VAVDQTAYDRC 76
           +  DQ AY RC
Sbjct: 139 ITWDQKAYSRC 149


>IMGA|Medtr1g039640.1 Uncharacterized protein At4g15970, putative
          chr01_pseudomolecule_IMGAG_V3 9073487-9071273 E
          EGN_Mt090430 20090702
          Length = 314

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 50/70 (71%), Gaps = 5/70 (7%)

Query: 8  LEMALQKASMPNKTVIIAVLNKAYVEPSVKSETTMLDLFLESFWYGEDTRSLLDHLLVVA 67
          LE  L +A+M ++TVI+  LN+A+  P+     +++DLFL+SF  G  TR LL+HL+++A
Sbjct: 21 LEKILNEAAMEDRTVILTTLNEAWAAPN-----SVIDLFLDSFRIGVRTRRLLNHLVIIA 75

Query: 68 VDQTAYDRCK 77
          +DQ A+ RC+
Sbjct: 76 LDQKAFVRCQ 85