Jatropha Genome Database

JcCA0313321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313321.10 + phase: 0 
         (433 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g046750.1 Zinc finger, C2H2-type chr05_pseudomolecule...   193   1e-49
IMGA|Medtr4g115660.1 Zinc finger, C2H2-type chr04_pseudomolecule...    90   2e-18
IMGA|Medtr4g036160.1 Zinc finger, C2H2-type chr04_pseudomolecule...    57   1e-08

>IMGA|Medtr5g046750.1 Zinc finger, C2H2-type
           chr05_pseudomolecule_IMGAG_V3 19675613-19674069 E
           EGN_Mt090430 20090702
          Length = 514

 Score =  193 bits (491), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 134/334 (40%), Positives = 172/334 (51%), Gaps = 39/334 (11%)

Query: 11  ICKFCNKRYPCGKSLGGHIRIHLXXXXXXXX--XXXXXXTDLEDESFVAANGSNSKR--- 65
           +CK+C KR+PCGKSLGGHIR H+                    +  F    G   KR   
Sbjct: 5   VCKYCLKRFPCGKSLGGHIRTHMMSENSLQSNEEKRMNANASVNAMFKFDEGRKRKRLDL 64

Query: 66  -----------DSELYRLRENPRKTRRFMADSSNSHFLQEKVCKACGKGFQSLKALCGHM 114
                       + +Y LRENP+KT RF+  ++ +    EK CK CGKGF SLKALCGHM
Sbjct: 65  GSNGGGSGGDDGNLIYGLRENPKKTTRFVHSNAAATVQMEKFCKECGKGFPSLKALCGHM 124

Query: 115 ACHSK-----NSFEDQSETTERLKDQVFDSQSDTETSAPSKXXXXXXXXYKTI------- 162
           ACHS+     N  E  S   E+ K  V DSQSDTE S  +         +K +       
Sbjct: 125 ACHSEKDKGANRIESVSGVREKQK-LVMDSQSDTEASVQTDSRRSRRMKFKNLSGGGGDN 183

Query: 163 ----GVYXXXXXXXXXDLEQEQEEVAMCLMMLSKDSGFKGCFSSIADSSDNNSVVLETKS 218
                ++         ++EQEQE+VA CLM+LS+DS +KG F  + +SSDNNSVV+E KS
Sbjct: 184 KSSSSLHWGNCSSSVSEVEQEQEDVARCLMLLSRDSTYKGRFPLVTESSDNNSVVVEEKS 243

Query: 219 SSSPELKIGIKKNGVNCV--YNNGNAVLEMKKAKKQVMSTE--NDQSENSDSGYFRNGPK 274
            S  + K  +   G N V   NNG  + E K  K   M +      S+NSDSGYF  GPK
Sbjct: 244 PSV-DTKFAVMNRGKNIVGAKNNGFELAEKKLNKDGKMKSVEIGYVSDNSDSGYFTYGPK 302

Query: 275 KVESEISVHGFVGNDKFKKHKVEFRSRFEEEDID 308
           KVES+ S  GF  ND  K  KV + S F++ D +
Sbjct: 303 KVESDDSSDGFFRNDA-KSSKVGYFSSFQDHDFE 335


>IMGA|Medtr4g115660.1 Zinc finger, C2H2-type
           chr04_pseudomolecule_IMGAG_V3 26829281-26830780 H
           EGN_Mt090430 20090702
          Length = 321

 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 67/128 (52%), Gaps = 18/128 (14%)

Query: 5   QKKKLFICKFCNKRYPCGKSLGGHIRIHLXXXXXXXXXXXXXXTDLEDESFVAANGSNSK 64
           +K + F+CK+C KR+PCGKSLGGHIR H+               D  +   VAA   +  
Sbjct: 3   EKHRKFVCKYCFKRFPCGKSLGGHIRTHMTEERNNAAAIAAAGGDAAEH--VAAGVGDG- 59

Query: 65  RDSELYRLRENPRKTRRFMADSSNSHFLQE--------------KVCKACGKGFQSLKAL 110
             + +Y LRENP+KT RF+    + +                  K CK CGKGF SLKAL
Sbjct: 60  -GNLIYGLRENPKKTMRFVHSHHHHYNHHAATAAATTLEQNEMIKFCKECGKGFPSLKAL 118

Query: 111 CGHMACHS 118
           CGHMA HS
Sbjct: 119 CGHMASHS 126


>IMGA|Medtr4g036160.1 Zinc finger, C2H2-type
           chr04_pseudomolecule_IMGAG_V3 8812372-8810265 H
           EGN_Mt090430 20090702
          Length = 461

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 73/181 (40%), Gaps = 24/181 (13%)

Query: 11  ICKFCNKRYPCGKSLGGHIRIHLXXXXXXXXXXXXXXTDLEDESFVAANGSNSKRDSELY 70
            CK C K + CG++LGGH+R H               +D E  +   +N    KR   +Y
Sbjct: 14  FCKICKKGFGCGRALGGHMRAHGIGDETSQMDDDDPASDWEGGNVPPSN----KR---MY 66

Query: 71  RLRENPRKTRRFMADSSNSHFLQEKVCKACGKGFQSLKALCGHMACHSKNSFEDQSETTE 130
            LR NP K +              +VC+ CGK F S K+   H  C+S     D ++   
Sbjct: 67  SLRTNPNKLKSC------------RVCEHCGKEFFSWKSFLEHGKCNS-----DDADEEF 109

Query: 131 RLKDQVFDSQSDTETSAPSKXXXXXXXXYKTIGVYXXXXXXXXXDLEQEQEEVAMCLMML 190
            +     D+ +D      ++         +++            +   E+E++A CLMML
Sbjct: 110 IISSPESDAMADDGDGVSARRGCGWSKRKRSMRTKVGSYNNNYNNPSSEEEDLANCLMML 169

Query: 191 S 191
           S
Sbjct: 170 S 170