Jatropha Genome Database

JcCA0313071.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313071.20 - phase: 2 /partial
         (227 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g077640.1 FY-rich, C-terminal; WD40-like chr08_pseudo...   162   1e-40

>IMGA|Medtr8g077640.1 FY-rich, C-terminal; WD40-like
            chr08_pseudomolecule_IMGAG_V3 15506587-15518826 E
            EGN_Mt090430 20090702
          Length = 1262

 Score =  162 bits (409), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 93/228 (40%), Positives = 136/228 (59%), Gaps = 7/228 (3%)

Query: 5    EFTITSND-YISPCIMELKRIPECASLVIGHNGFGEFTLWDISRRIFVSRFSTPGTSVCQ 63
            E++I   D  +SP I+ELK++P CA LV+  N +G+F+LWDI++   VS FS     + +
Sbjct: 1019 EYSIIPPDGSMSPGIVELKKVPNCAHLVVSRNIYGDFSLWDITKLNCVSSFSASEYLINE 1078

Query: 64   FCPISWFSWQREVHASNYPNVAAHINRLIDATKVQFSEHSKNHSFPPLKGEDVAIWCLVS 123
            F PIS    Q +    +Y +V     +L++AT +  SE  +   +  L  +DVA+W LVS
Sbjct: 1079 FFPISLLHLQTKGLGLSYASVEEKAEKLLEATNLWHSEKRETCVYL-LPTDDVAMWFLVS 1137

Query: 124  TALNTDAQHKYESSASQ--INPIGWWRLALLVKNTIILGSALDTRVSAIGTSAGHGIIGT 181
            T  + D    + SS++   ++    WRLALLVKN+II GS LD R + +G S G+GI  T
Sbjct: 1138 TPSDVDCCQNHVSSSNHHDVHTARSWRLALLVKNSIIFGSPLDPRTTTVGVSGGYGITST 1197

Query: 182  LDGLVYMWELLTGDKLGTLHKFKGGSVSCIAADDSGSG---VVAVADE 226
             DG+VYMW+L TG KL TLH F+ G+ + +A DD  S     + V D+
Sbjct: 1198 SDGVVYMWKLSTGSKLDTLHHFQDGTATSLATDDLNSNSRSAIGVVDD 1245