Jatropha Genome Database

JcCA0312871.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312871.20 + phase: 0 
         (190 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g086640.1 hypothetical protein chr01_pseudomolecule_I...   250   4e-67

>IMGA|Medtr1g086640.1 hypothetical protein
           chr01_pseudomolecule_IMGAG_V3 17200201-17196927 F
           EGN_Mt090430 20090702
          Length = 246

 Score =  250 bits (638), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 121/180 (67%), Positives = 143/180 (79%), Gaps = 13/180 (7%)

Query: 20  LDPTKADTAKSRGLSIEKKIEFLESLTGKVSNRRSRRWINDRLLMELVPRLNAEEIRGLF 79
           ++  + D AKS  +SIEKKIEFLES TGKV+NRRSRRW+NDRLLMELVPRLNAEEIRGLF
Sbjct: 17  INHPRGDGAKSNSMSIEKKIEFLESFTGKVTNRRSRRWLNDRLLMELVPRLNAEEIRGLF 76

Query: 80  APPPWGDDVPLSPFCMTNVGEWEKFRNIDMDKQ-------------RRGRVDADKVAVLN 126
           APPP+GD+VP S F +TNV EW++FRNIDMDK+             + GR+DADK+AVLN
Sbjct: 77  APPPFGDEVPPSTFSLTNVEEWDRFRNIDMDKEVNIIHAFENSLEKKEGRIDADKMAVLN 136

Query: 127 AWRRIDSRTREALRRSFLTDLIEGYEACIRTFIQESGDEEVLALQVQDPFHRLLLHGVCE 186
            WRR+ S TREALRRS L +LIEGYE C+R FI ES D ++L L ++DPFHRLLLHGVCE
Sbjct: 137 GWRRVGSNTREALRRSSLFELIEGYEECLRAFITESTDGDLLELSIKDPFHRLLLHGVCE 196