Jatropha Genome Database

JcCA0312871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312871.10 - phase: 0 
         (343 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g086660.1 Helix-loop-helix DNA-binding chr01_pseudomo...   116   2e-26
IMGA|Medtr1g083450.2 Helix-loop-helix DNA-binding chr01_pseudomo...    75   5e-14
IMGA|Medtr1g083450.1 Helix-loop-helix DNA-binding chr01_pseudomo...    75   6e-14
IMGA|Medtr8g145720.1 Helix-loop-helix DNA-binding chr08_pseudomo...    70   1e-12
IMGA|Medtr8g145720.2 Helix-loop-helix DNA-binding chr08_pseudomo...    70   1e-12

>IMGA|Medtr1g086660.1 Helix-loop-helix DNA-binding
           chr01_pseudomolecule_IMGAG_V3 17207822-17210409 E
           EGN_Mt090430 20090702
          Length = 325

 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 113/359 (31%), Positives = 165/359 (45%), Gaps = 62/359 (17%)

Query: 1   MEGQ-NCYQNPLELMLPNLDGIDNHVSYGADDDLNQHSVMSD--GRSKNMTNSLP-LPQS 56
           MEG+ N  +N  +L     +G  NH      D   +H + +   GRS    N LP LPQ+
Sbjct: 1   MEGESNNKENSSKLASYEAEGTSNH------DVSEEHHIQNQYFGRSGIEWNFLPKLPQN 54

Query: 57  QWFHCQRTPQNYYEFLTENSSLVEKAPTHVLESIPQTVSDSHFIQGMTGIQTELLYNSSG 116
                     NY E+L+E+S             +P T + + +          ++ NS  
Sbjct: 55  ----------NYVEYLSESSCY-----------LPNTATTAEY---------NMIGNSHY 84

Query: 117 MACGSNPVDSSSDMDAWKLNLHPCIFNVDNQEDSLNVRC-LKQNDEGDPVK---KCKCLQ 172
              GS+   SSS  D  K +    + +  + +  +  R  L ++DEG+      +    Q
Sbjct: 85  HTLGSS---SSSFNDPGKADFGFKLIDSSSHDFGVRKRAGLWRSDEGEEEAHKFETGSSQ 141

Query: 173 HHSKSQSHTSWEEEPSEAIGNLSYSRP---RAKVAASVFLSNSSYNVSXXXXXXXXXXXX 229
           +   ++ H +W     +++G+  Y         VAA   L N     S            
Sbjct: 142 NLHYAEGHATW---TPDSVGDKQYGSQFDHMGVVAAPSLLPNPKSGGSSTKQKSEKTRYS 198

Query: 230 --------XXXLKALHNLVPQSVEGSQTAMVDDIIDYVKFLQLQVKELSRSRLGGELRSD 281
                      LKALH L+P    GSQ  ++DDIIDYVK+LQ+QVKELS S+L  +  S 
Sbjct: 199 DRQRRQRIADNLKALHELLPTPHVGSQAYILDDIIDYVKYLQIQVKELSGSKLQADSNSI 258

Query: 282 PSIFLEGYHHYIVHEQFRTEPLEETFTRLLEVNPSAATKFLESKGLFVMPMALADTISQ 340
           P +F EGY HYI  EQ   EPLEE    LLEVN +A  + LE+KGL ++P+AL D ++Q
Sbjct: 259 PLVFHEGYGHYI-KEQVLNEPLEEIMGNLLEVNSAATCQLLENKGLVLLPIALVDELNQ 316


>IMGA|Medtr1g083450.2 Helix-loop-helix DNA-binding
           chr01_pseudomolecule_IMGAG_V3 16409366-16405373 E
           EGN_Mt090430 20090702
          Length = 282

 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 66/116 (56%), Gaps = 11/116 (9%)

Query: 236 LHNLVPQSVEGSQTAMVDDIIDYVKFLQLQVKELSRSRLGGELRSDP--------SIFLE 287
           L  LVP   +  + AM+D+I+DYVKFL+LQVK LS SRLGG     P        S+  E
Sbjct: 149 LQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEE 208

Query: 288 GY---HHYIVHEQFRTEPLEETFTRLLEVNPSAATKFLESKGLFVMPMALADTISQ 340
           G     +    E++  +  E+   +L+E N  AA +FL+SK L +MP++LA  I Q
Sbjct: 209 GSDSGRNQPAWEKWSNDGTEKQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQ 264


>IMGA|Medtr1g083450.1 Helix-loop-helix DNA-binding
           chr01_pseudomolecule_IMGAG_V3 16409366-16405265 E
           EGN_Mt090430 20090702
          Length = 285

 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 66/116 (56%), Gaps = 11/116 (9%)

Query: 236 LHNLVPQSVEGSQTAMVDDIIDYVKFLQLQVKELSRSRLGGELRSDP--------SIFLE 287
           L  LVP   +  + AM+D+I+DYVKFL+LQVK LS SRLGG     P        S+  E
Sbjct: 152 LQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEE 211

Query: 288 GY---HHYIVHEQFRTEPLEETFTRLLEVNPSAATKFLESKGLFVMPMALADTISQ 340
           G     +    E++  +  E+   +L+E N  AA +FL+SK L +MP++LA  I Q
Sbjct: 212 GSDSGRNQPAWEKWSNDGTEKQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQ 267


>IMGA|Medtr8g145720.1 Helix-loop-helix DNA-binding
           chr08_pseudomolecule_IMGAG_V3 35494532-35490796 E
           EGN_Mt090430 20090702
          Length = 403

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 69/126 (54%), Gaps = 19/126 (15%)

Query: 233 LKALHNLVPQSVEGSQTAMVDDIIDYVKFLQLQVKELSRSRLGGELRSDPSIF---LEGY 289
           +KAL  LVP + +  + +M+D+IIDYVKFLQ+QVK LS SRLGG     P +     EG 
Sbjct: 225 MKALQELVPNANKTDKASMLDEIIDYVKFLQVQVKVLSMSRLGGAGAVAPLVADMSSEGV 284

Query: 290 HHYI-------VHEQ------FRTEPL---EETFTRLLEVNPSAATKFLESKGLFVMPMA 333
              +       VH +         E L   E    +L+E +  +A ++L+ KGL +MP++
Sbjct: 285 SDCVQTNGNGGVHPRNPKTASSSNESLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPIS 344

Query: 334 LADTIS 339
           LA  IS
Sbjct: 345 LATAIS 350


>IMGA|Medtr8g145720.2 Helix-loop-helix DNA-binding
           chr08_pseudomolecule_IMGAG_V3 35494532-35490796 E
           EGN_Mt090430 20090702
          Length = 400

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 69/126 (54%), Gaps = 19/126 (15%)

Query: 233 LKALHNLVPQSVEGSQTAMVDDIIDYVKFLQLQVKELSRSRLGGELRSDPSIF---LEGY 289
           +KAL  LVP + +  + +M+D+IIDYVKFLQ+QVK LS SRLGG     P +     EG 
Sbjct: 222 MKALQELVPNANKTDKASMLDEIIDYVKFLQVQVKVLSMSRLGGAGAVAPLVADMSSEGV 281

Query: 290 HHYI-------VHEQ------FRTEPL---EETFTRLLEVNPSAATKFLESKGLFVMPMA 333
              +       VH +         E L   E    +L+E +  +A ++L+ KGL +MP++
Sbjct: 282 SDCVQTNGNGGVHPRNPKTASSSNESLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPIS 341

Query: 334 LADTIS 339
           LA  IS
Sbjct: 342 LATAIS 347