Jatropha Genome Database

JcCA0312671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312671.10 + phase: 1 /pseudo/partial
         (346 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g100690.1 Dihydrolipoamide acetyltransferase, long fo...   218   4e-57
IMGA|Medtr2g006710.1 Dihydrolipoamide acetyltransferase, long fo...   213   9e-56
IMGA|Medtr8g021820.1 2-oxo acid dehydrogenase, lipoyl-binding si...    60   2e-09

>IMGA|Medtr5g100690.1 Dihydrolipoamide acetyltransferase, long form
           chr05_pseudomolecule_IMGAG_V3 40271137-40278283 F
           EGN_Mt090430 20090702
          Length = 455

 Score =  218 bits (555), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 124/229 (54%), Positives = 147/229 (64%), Gaps = 19/229 (8%)

Query: 42  QWLRACPMLXLLHFLREITTLVQSEYLFGFKSRSFSSDSGDLVDAVVPFMGESITDGTLA 101
           +W+ + P+  + H    I T            RSFSSD+GD VD VVP + ESI DGTLA
Sbjct: 55  RWINSKPIRDIFHQEASIQTW----------KRSFSSDNGDNVDVVVPPLAESIEDGTLA 104

Query: 102 KFLKKPGDRVEVDEPIAQIETDKVTIDVASPEAGTIQKLVAKEGETVEPGTKIAVISKSG 161
           KFLK+PGD+V VDEPIAQIETDKVTIDV SPE+G I KL+A EG+TV PG KIA+IS+S 
Sbjct: 105 KFLKRPGDKVNVDEPIAQIETDKVTIDVPSPESGVILKLLANEGDTVAPGNKIAIISRSA 164

Query: 162 XXXXXXXXXXXXXXXXXXXXXXXSGGKQTPAVDSGPIKDSKRAPSAPQPPVKTPSSAPKP 221
                                     KQTP       K + +  +  + P KTP+    P
Sbjct: 165 --------DATTHVAPSETSPQKPAPKQTPKASEPEEKKAPKVETTTEKP-KTPAPQSSP 215

Query: 222 TEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDISVLI 270
           TEPQLPPK+RERRVPMTRLRKRVA RLKDSQNTFAMLTTFNEVD++ L+
Sbjct: 216 TEPQLPPKERERRVPMTRLRKRVAQRLKDSQNTFAMLTTFNEVDMTNLM 264


>IMGA|Medtr2g006710.1 Dihydrolipoamide acetyltransferase, long form
           chr02_pseudomolecule_IMGAG_V3 784152-792373 F
           EGN_Mt090430 20090702
          Length = 453

 Score =  213 bits (543), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 125/232 (53%), Positives = 149/232 (64%), Gaps = 24/232 (10%)

Query: 42  QWLRACPMLXLLHFLREITTLVQSEYLFGFKSRSFSSDSGDLVDAVVPFMGESITDGTLA 101
           +W+ + P+  + H    + T            RSFSSD+GD VD VVP + ESI DGTLA
Sbjct: 52  RWISSKPIRDIFHQEASVQTW----------KRSFSSDNGDNVDVVVPPLAESIEDGTLA 101

Query: 102 KFLKKPGDRVEVDEPIAQIETDKVTIDVASPEAGTIQKLVAKEGETVEPGTKIAVISKSG 161
           KFLK+PGDRV VDEPIAQIETDKVTIDV SPE+G I KL+A EG+TV PG KIA+IS+S 
Sbjct: 102 KFLKRPGDRVNVDEPIAQIETDKVTIDVPSPESGVILKLLANEGDTVAPGNKIAIISRSA 161

Query: 162 XXXXXXXXXXXXXXXXXXXXXXXSG---GKQTPAVDSGPIKDSKRAPSAPQPPVKTPSSA 218
                                  +     K+TP V++     +   P AP     TP S+
Sbjct: 162 DATTHVAPSETAPEKPAPKPTPKASEPEEKKTPKVET----TTTEKPKAP-----TPQSS 212

Query: 219 PKPTEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDISVLI 270
             PTEPQLPPK+RERRVPMTRLRKRVA RLKDSQNTFAMLTTFNEVD++ L+
Sbjct: 213 --PTEPQLPPKERERRVPMTRLRKRVAQRLKDSQNTFAMLTTFNEVDMTNLM 262


>IMGA|Medtr8g021820.1 2-oxo acid dehydrogenase, lipoyl-binding site
           chr08_pseudomolecule_IMGAG_V3 4165725-4173201 E
           EGN_Mt090430 20090702
          Length = 543

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 68/127 (53%), Gaps = 15/127 (11%)

Query: 31  MFCTKRGYYQWQWLRACPMLXLLHFLREITTLVQSEYLFGFKSRSFSSDSGDLVDAVVPF 90
           M   KRGY +   L            REI+   Q+  +   +S S +SD     +  +P 
Sbjct: 76  MSTMKRGYMRESLLN-----------REIS---QNSQVLSRRSYSSASDLPPHQEIGMPS 121

Query: 91  MGESITDGTLAKFLKKPGDRVEVDEPIAQIETDKVTIDVASPEAGTIQKLVAKEGET-VE 149
           +  ++T+G +A++LKK GD+V   E + ++ETDK T+++   E G + K+V KEGE  ++
Sbjct: 122 LSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGFLAKIVRKEGEKEIQ 181

Query: 150 PGTKIAV 156
            G  IA+
Sbjct: 182 VGEVIAI 188