Jatropha Genome Database

JcCA0312651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312651.10 + phase: 0 /partial
         (357 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g104600.1 Gonadotropin, beta chain chr04_pseudomolecu...   244   6e-65

>IMGA|Medtr4g104600.1 Gonadotropin, beta chain
           chr04_pseudomolecule_IMGAG_V3 22905444-22908281 E
           EGN_Mt090430 20090702
          Length = 502

 Score =  244 bits (622), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 159/342 (46%), Positives = 206/342 (60%), Gaps = 24/342 (7%)

Query: 18  QRRSRHKCIEVR-NCGNFDKQAHLLQRRLEKFAGESDEACVKEIQEMAEASLSIKXXXXX 76
           Q+RS  K  E R N  NFDKQ  +LQRRLEK  G SD   ++E +EM   SLS K     
Sbjct: 168 QKRSTVKDFEGRRNSRNFDKQVSVLQRRLEKIGGPSDGIYLREFEEMENVSLSFKRSSRF 227

Query: 77  XXXXXXXXXXANMEILRKKMEGLSKEHLLERMEEECGPMLSTANTSGSSSVANCKRIELQ 136
                      N+EILR+KMEGLSK  LLERMEEE     S   ++ SSS +  KR+E Q
Sbjct: 228 DDSVVASGK-LNVEILRRKMEGLSKGILLERMEEEYN---SLLLSTASSSASTSKRVEFQ 283

Query: 137 EMSSSSMRPQSKERKLYEERACSGCCKAIVQRVVEQVRAETEQWSQMQEMLGQVRDEMEE 196
                ++          E   CSG CK IV+R+VEQVR ETEQWSQMQEMLGQVR+EMEE
Sbjct: 284 VPHQENLS--------CEANLCSGHCKTIVRRIVEQVRVETEQWSQMQEMLGQVREEMEE 335

Query: 197 LQASRDFWEDRALDSDYQIQSLQSAVKEWRRKAVSSEAKANELQAQVMXXXXXXXXXXXX 256
           LQASRDFW+DRAL SD QIQSL + V+EW+++A+SSE+K NE++A++             
Sbjct: 336 LQASRDFWKDRALHSDSQIQSLHNDVQEWKQRALSSESKKNEIEAKLSMLCVDFEKFQNE 395

Query: 257 XXXXTIRTKNQKLNP-HTESPNEMEKRVLVCRLKENRQANCGDGSKQKEMFADGRKKSHS 315
                   K  K  P   ++  E EKR+++C  KE + +N  +  K  E+  +G +K+H+
Sbjct: 396 QNV----VKGTKCPPVPLDTQKEFEKRIVICSSKE-KSSNVTENRKHGEVLRNGERKTHA 450

Query: 316 ----LNASKRSPFREIGNSSSPLSR-QNSRAVFPLRCSIPSN 352
               L   KR PF++IGN+SS L+R QN +AVFPL C + SN
Sbjct: 451 ARGGLLVPKRMPFQDIGNNSSLLTRQQNGKAVFPLHCHLSSN 492