Jatropha Genome Database

JcCA0312601.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312601.10 - phase: 0 /pseudo/partial
         (68 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g121920.2 Zinc finger, DHHC-type chr04_pseudomolecule...    51   1e-07
IMGA|Medtr4g121920.1 Zinc finger, DHHC-type chr04_pseudomolecule...    51   1e-07

>IMGA|Medtr4g121920.2 Zinc finger, DHHC-type
          chr04_pseudomolecule_IMGAG_V3 28746630-28750995 E
          EGN_Mt090430 20090702
          Length = 298

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 31/47 (65%)

Query: 1  SNAQQKQNKRWFDKIGLGKIGDTGYAPILFSIVIALMFLFINSVLSG 47
          SN Q+  +K W  K+  G + D GYAPIL  +++ L FLFINSV++ 
Sbjct: 4  SNQQRAHSKHWRGKLYCGLVTDIGYAPILLCVIVFLSFLFINSVVAA 50


>IMGA|Medtr4g121920.1 Zinc finger, DHHC-type
           chr04_pseudomolecule_IMGAG_V3 28743302-28750995 E
           EGN_Mt090430 20090702
          Length = 540

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 31/47 (65%)

Query: 1   SNAQQKQNKRWFDKIGLGKIGDTGYAPILFSIVIALMFLFINSVLSG 47
           SN Q+  +K W  K+  G + D GYAPIL  +++ L FLFINSV++ 
Sbjct: 245 SNQQRAHSKHWRGKLYCGLVTDIGYAPILLCVIVFLSFLFINSVVAA 291