Jatropha Genome Database

JcCA0312091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312091.10 - phase: 0 /partial
         (145 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g083100.1 DNA polymerase, beta-like region chr05_pseu...    97   2e-21
IMGA|Medtr3g124510.1 hypothetical protein chr03_pseudomolecule_I...    65   8e-12

>IMGA|Medtr5g083100.1 DNA polymerase, beta-like region
           chr05_pseudomolecule_IMGAG_V3 31478197-31466857 E
           EGN_Mt090430 20090702
          Length = 833

 Score = 97.4 bits (241), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/114 (44%), Positives = 75/114 (65%), Gaps = 23/114 (20%)

Query: 49  PTLASEQKRKEVIDYIRRLIKG---------------------YYATEVFPSGSVPLKTY 87
           PTLA++++R+EV+DY++RLI+                      +   +VFP GSVPLKTY
Sbjct: 57  PTLAADRRRREVVDYVQRLIRYGARCEKLLPNVWRKLDFEVRIFRIGKVFPYGSVPLKTY 116

Query: 88  LPDGDIDLTVLSYQNMEEDLAREVYNMLKYEEQHPMS--EVKDVQYIQAQVKIL 139
           LPDGDIDLT LS QN+E+ L  +V+ +L+ EE +  +  EVKDV++I A+VK++
Sbjct: 117 LPDGDIDLTALSPQNIEDGLVSDVHAVLRGEENNDAAEYEVKDVRFIDAEVKLV 170


>IMGA|Medtr3g124510.1 hypothetical protein
           chr03_pseudomolecule_IMGAG_V3 31584789-31578858 H
           EGN_Mt090430 20090702
          Length = 805

 Score = 65.5 bits (158), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/94 (40%), Positives = 54/94 (57%), Gaps = 3/94 (3%)

Query: 49  PTLASEQKRKEVIDYIRRLIKGYYATEVFPSGSVPLKTYLPDGDIDLTVLSYQNM-EEDL 107
           P   SE  R  ++ YI+ LI  +   +VF  GSVPLKTYL DGDIDLT+     +  E  
Sbjct: 65  PNPKSETLRNNIVSYIKGLIISHVPVKVFEFGSVPLKTYLRDGDIDLTIFGNNELFPEIF 124

Query: 108 AREVYNMLKYEEQHPMSE--VKDVQYIQAQVKIL 139
              +  +L+ E  +  S+  VK+VQ + A+VKI+
Sbjct: 125 IPHIQQILESEMNNEFSKFRVKEVQLVNAEVKII 158