Jatropha Genome Database

JcCA0311881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311881.10 + phase: 2 /partial/short
         (44 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g133030.1 hypothetical protein chr08_pseudomolecule_I...    55   7e-09

>IMGA|Medtr8g133030.1 hypothetical protein
          chr08_pseudomolecule_IMGAG_V3 31557349-31558005 E
          EGN_Mt090430 20090702
          Length = 87

 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 31/41 (75%)

Query: 1  NMVSLWTCSKVSIIFFVAGVFVGYTLKSRVKRWASKLLKRL 41
           ++S WTCSK+  I FV GV  GYTL+ RVKRWASK+L +L
Sbjct: 46 QVLSYWTCSKLCAICFVGGVIFGYTLRGRVKRWASKILNKL 86