Jatropha Genome Database

JcCA0311741.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311741.20 - phase: 0 
         (236 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC235756_2.1 Rhodanese-like AC235756.1 14706-16792 F EGN_Mt...   125   2e-29
IMGA|Medtr7g111490.1 Rhodanese-like chr07_pseudomolecule_IMGAG_V...    71   6e-13
IMGA|Medtr3g123390.2 Rhodanese-like chr03_pseudomolecule_IMGAG_V...    48   4e-06

>IMGA|AC235756_2.1 Rhodanese-like AC235756.1 14706-16792 F
           EGN_Mt090430 20090702
          Length = 224

 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 99/161 (61%), Gaps = 2/161 (1%)

Query: 26  MIREGKVNVLTPREAGYAIQLSSKILLDVRPSVEQKKAWVKGSTWIPIFEVDDRSDIGTL 85
           +I  G +  + P++A   +     +LLDVRP+ E++KA VKGS  +P+F  D  +   TL
Sbjct: 52  LIESGTIRTILPKDASTVMNSEGFVLLDVRPNWEREKAHVKGSLHVPMFVEDKDNGPLTL 111

Query: 86  SKKFTNFMMGGWWSGVPTLTYDNQFLSKVEEKFP-KDTDLIVACQRGLRSLAACELLYNA 144
            KK+ +F   G W+G    T++++FLS+VE   P K T ++VAC  GLRS+ A   LYN 
Sbjct: 112 LKKWVHFGYIGAWTGQYLTTFNSEFLSQVENVVPGKGTKVLVACGEGLRSMTATSKLYNG 171

Query: 145 GYRNLFWVQGGLEAAEEEDLV-IEGPQPLKFAGIGGVSEFL 184
           GYRNL W+ GG   ++++D   +EG + LK+A IGG S + 
Sbjct: 172 GYRNLGWLVGGFSRSKDDDFSDVEGKEKLKYATIGGASYYF 212


>IMGA|Medtr7g111490.1 Rhodanese-like chr07_pseudomolecule_IMGAG_V3
           26208571-26205659 F EGN_Mt090430 20090702
          Length = 234

 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 1/170 (0%)

Query: 16  MAAAKRRWDAMIREGKVNVLTPREAGYAIQLSSKILLDVRPSVEQKKAWVKGSTWIPIFE 75
           ++  K R    I+  ++  +T  +A   +++    +LDVR   + ++A +K    +P+F 
Sbjct: 32  VSQCKMRKKFTIK-AEIKFVTADDAKELVKVDGYNVLDVRDKSQYERAHIKTCYHVPLFV 90

Query: 76  VDDRSDIGTLSKKFTNFMMGGWWSGVPTLTYDNQFLSKVEEKFPKDTDLIVACQRGLRSL 135
            +  +D GT   +  +    G + G+P    +  F+  V+ +   +T L++ CQ GLRS 
Sbjct: 91  ENTDNDPGTFLLRTVHNNFSGLFFGIPFTRPNPDFVQSVKSQIQPETKLLIVCQEGLRSA 150

Query: 136 AACELLYNAGYRNLFWVQGGLEAAEEEDLVIEGPQPLKFAGIGGVSEFLG 185
           AA   L +AG++N+  +  GL+  +       G   L+ AG  G+ +  G
Sbjct: 151 AAANKLEDAGFQNVACITSGLQTVKPGTFESVGSTELQNAGKAGLVQIQG 200


>IMGA|Medtr3g123390.2 Rhodanese-like chr03_pseudomolecule_IMGAG_V3
           30952600-30950282 F EGN_Mt090430 20090702
          Length = 232

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 20/154 (12%)

Query: 26  MIREGKVNVLTPREAGYAIQLSSKILLDVRPSVEQKKAWVKGSTWIPIFEVDDRSDIGTL 85
           ++ + +V  + P+EA    + ++ ++LDVRP  E K+     +  + ++ +        +
Sbjct: 78  LLLQKRVKSVEPKEALRLQKENNFVILDVRPEAEFKEGHPPDAINVQVYRLIKEWTAWDI 137

Query: 86  SKKFTNFMMGGWWSGVPTLTYDN-QFLSKVEEKFPKDTDLIVACQRG------------- 131
           +++   F   G +SG    T +N +F+  V E+  K+  +IVAC  G             
Sbjct: 138 ARR-AAFAFFGIFSG----TEENPEFIKSVGEQLDKNAKIIVACSAGGTMKPTQNLPQGQ 192

Query: 132 -LRSLAACELLYNAGYRNLFWVQGGLEAAEEEDL 164
             RSL A  LL   GY N+F ++GGL    +EDL
Sbjct: 193 QSRSLIAAYLLVLNGYNNVFHLEGGLYKWFKEDL 226