Jatropha Genome Database

JcCA0311501.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311501.20 + phase: 0 
         (341 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g083540.1 37 kDa inner envelope membrane protein, chl...   532   e-152
IMGA|Medtr1g083540.2 37 kDa inner envelope membrane protein, chl...   526   e-150

>IMGA|Medtr1g083540.1 37 kDa inner envelope membrane protein,
           chloroplast precursor, putative
           chr01_pseudomolecule_IMGAG_V3 16486769-16490181 F
           EGN_Mt090430 20090702
          Length = 347

 Score =  532 bits (1371), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 267/347 (76%), Positives = 289/347 (83%), Gaps = 6/347 (1%)

Query: 1   MASSMINGAENLTLARGITQKGLGF--SGSDFHGKYF--PRVNLVSSARIFKATRIVTPK 56
           MAS M++G   LT     TQ G GF  SGSDF+GK    P+ ++ +  R+    R +  +
Sbjct: 1   MASLMLSGTGKLTFLNCKTQNGNGFGLSGSDFNGKSLISPKTSINAKIRVSNLKRNIVVR 60

Query: 57  CSLSASRPASQPR--FIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLNNR 114
            S S S      +  FIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRD+ALEPA+L +R
Sbjct: 61  SSSSVSSSRPSSQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPAELTDR 120

Query: 115 NMLVVDVXXXXXXXXXXIVKHVDAKNVTILDQSPHQLAKAKQKEPLKDCKIIEGDAEDLP 174
           NM+VVDV          IVKHVDAKNVTILDQSPHQLAKAK+KEPLKDCKI+EGDAEDLP
Sbjct: 121 NMIVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKEKEPLKDCKIVEGDAEDLP 180

Query: 175 FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKLGGKACLIGPVYPTFWLSRFFADVWML 234
           F TDYADRYVSAGSIEYWPDPQRGIKEAYRVLK GGKACLIGPVYPTFWLSRFFADVWML
Sbjct: 181 FRTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKFGGKACLIGPVYPTFWLSRFFADVWML 240

Query: 235 FPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPK 294
           FPKEEEYIEWF KAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPK
Sbjct: 241 FPKEEEYIEWFTKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPK 300

Query: 295 EEDVSKPVHPFVFLLRFVLGALAATYYVLVPIYMWLKDQIVPKGRPI 341
           EEDV KPV+P VFLLRF LG LAA++YVL+PIYMWLKDQIVPK +PI
Sbjct: 301 EEDVEKPVNPLVFLLRFALGILAASWYVLIPIYMWLKDQIVPKDQPI 347


>IMGA|Medtr1g083540.2 37 kDa inner envelope membrane protein,
           chloroplast precursor, putative
           chr01_pseudomolecule_IMGAG_V3 16486769-16490180 F
           EGN_Mt090430 20090702
          Length = 343

 Score =  526 bits (1356), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 264/343 (76%), Positives = 286/343 (83%), Gaps = 6/343 (1%)

Query: 5   MINGAENLTLARGITQKGLGF--SGSDFHGKYF--PRVNLVSSARIFKATRIVTPKCSLS 60
           M++G   LT     TQ G GF  SGSDF+GK    P+ ++ +  R+    R +  + S S
Sbjct: 1   MLSGTGKLTFLNCKTQNGNGFGLSGSDFNGKSLISPKTSINAKIRVSNLKRNIVVRSSSS 60

Query: 61  ASRPASQPR--FIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLNNRNMLV 118
            S      +  FIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRD+ALEPA+L +RNM+V
Sbjct: 61  VSSSRPSSQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPAELTDRNMIV 120

Query: 119 VDVXXXXXXXXXXIVKHVDAKNVTILDQSPHQLAKAKQKEPLKDCKIIEGDAEDLPFPTD 178
           VDV          IVKHVDAKNVTILDQSPHQLAKAK+KEPLKDCKI+EGDAEDLPF TD
Sbjct: 121 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKEKEPLKDCKIVEGDAEDLPFRTD 180

Query: 179 YADRYVSAGSIEYWPDPQRGIKEAYRVLKLGGKACLIGPVYPTFWLSRFFADVWMLFPKE 238
           YADRYVSAGSIEYWPDPQRGIKEAYRVLK GGKACLIGPVYPTFWLSRFFADVWMLFPKE
Sbjct: 181 YADRYVSAGSIEYWPDPQRGIKEAYRVLKFGGKACLIGPVYPTFWLSRFFADVWMLFPKE 240

Query: 239 EEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKEEDV 298
           EEYIEWF KAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKEEDV
Sbjct: 241 EEYIEWFTKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKEEDV 300

Query: 299 SKPVHPFVFLLRFVLGALAATYYVLVPIYMWLKDQIVPKGRPI 341
            KPV+P VFLLRF LG LAA++YVL+PIYMWLKDQIVPK +PI
Sbjct: 301 EKPVNPLVFLLRFALGILAASWYVLIPIYMWLKDQIVPKDQPI 343