Jatropha Genome Database

JcCA0311501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311501.10 - phase: 0 /partial
         (215 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g140920.1 Rh-like protein/ammonium transporter chr07_...   293   4e-80
IMGA|Medtr8g088950.1 Rh-like protein/ammonium transporter chr08_...   233   4e-62
IMGA|Medtr4g144250.1 Rh-like protein/ammonium transporter chr04_...   230   5e-61
IMGA|Medtr7g075790.1 Rh-like protein/ammonium transporter chr07_...   226   4e-60

>IMGA|Medtr7g140920.1 Rh-like protein/ammonium transporter
           chr07_pseudomolecule_IMGAG_V3 34018219-34020526 E
           EGN_Mt090430 20090702
          Length = 480

 Score =  293 bits (750), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 138/187 (73%), Positives = 162/187 (86%), Gaps = 1/187 (0%)

Query: 6   NLPSGLMHDDASPEWMNKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMAL 65
            LPS L+ D+ASPEWMNK DNAWQLTAAT+VGLQS+PGLVILYGS+VKK WA+NSAFMA 
Sbjct: 2   ELPSNLLPDEASPEWMNKGDNAWQLTAATMVGLQSIPGLVILYGSLVKKTWAINSAFMAF 61

Query: 66  YAFAAVLVCWVGWGYQMSFGNNKFAPFLGKPGVSLDQKFLLDQGFAGKFPSATMVYFQFV 125
           YAFA+VL+CWV W YQMSFG  K   FLGKP V+LD+KFLL + F G FP+ATMV++Q V
Sbjct: 62  YAFASVLLCWVSWAYQMSFGE-KMVFFLGKPNVALDEKFLLGKAFLGNFPNATMVFYQGV 120

Query: 126 FAAITLILVAGALLGRMNFHAWMLFVPLWLTFSYTITAYSIWCPTGWLAKMGIIDYSGGY 185
           FA +TLIL+AGALLGRMN  AWMLFVPLW+TFSYT+ A+SIWCP GWLAK G+ID++GGY
Sbjct: 121 FAGLTLILIAGALLGRMNIRAWMLFVPLWVTFSYTVVAFSIWCPDGWLAKRGVIDFAGGY 180

Query: 186 VIHLASG 192
           VIHL++G
Sbjct: 181 VIHLSAG 187


>IMGA|Medtr8g088950.1 Rh-like protein/ammonium transporter
           chr08_pseudomolecule_IMGAG_V3 19012028-19014289 H
           EGN_Mt090430 20090702
          Length = 481

 Score =  233 bits (595), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 129/188 (68%), Positives = 154/188 (81%), Gaps = 4/188 (2%)

Query: 6   NLPSGLMHDDASPEWMNKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMAL 65
           +LP  L+ +DASPEW NKADNAWQLTAATLVGLQ+VPGLVILYGS+VKKKWAVNSAFMAL
Sbjct: 11  HLPESLLPNDASPEWNNKADNAWQLTAATLVGLQTVPGLVILYGSMVKKKWAVNSAFMAL 70

Query: 66  YAFAAVLVCWVGWGYQMSFGNNKFAPFLGKPGVSLDQKFLLDQGFAGKF-PSATMVYFQF 124
           YAFAAVLVCWV W + M+FG  K  PF+GKP  +L QKFLL +     + P A  V++QF
Sbjct: 71  YAFAAVLVCWVLWAHHMAFG-TKLLPFVGKPNFALSQKFLLSKASTNYYLPMADFVFYQF 129

Query: 125 VFAAITLILVAGALLGRMNFHAWMLFVPLWLTFSYTITAYSIWCPTGWLAKMGIIDYSGG 184
            FAAITL+L+ G+LLGRMNF+AWMLFVPLWLT SYT+ A++IW   G+L +  IIDY+GG
Sbjct: 130 AFAAITLVLLGGSLLGRMNFYAWMLFVPLWLTLSYTVGAFTIWG-NGFL-EGKIIDYAGG 187

Query: 185 YVIHLASG 192
           +VIHL+SG
Sbjct: 188 FVIHLSSG 195


>IMGA|Medtr4g144250.1 Rh-like protein/ammonium transporter
           chr04_pseudomolecule_IMGAG_V3 36248258-36245615 E
           EGN_Mt090430 20090702
          Length = 485

 Score =  230 bits (586), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 120/195 (61%), Positives = 148/195 (75%), Gaps = 20/195 (10%)

Query: 16  ASPEWMNKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCW 75
           A P+W+NK DN+WQ+ +ATLVG+QS+PGLVILYGSIVKKKWAVNSAFMALYAFAAV++CW
Sbjct: 20  AVPDWLNKGDNSWQMISATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVIICW 79

Query: 76  VGWGYQMSFGNNKFAPFLGKPGVSLDQKFLLDQG------------------FAGKFPSA 117
           V W Y+MSFG  K  PF GK G +L QKFL+ Q                       +P A
Sbjct: 80  VTWAYKMSFG-EKLLPFWGKAGPALGQKFLIRQAGLPATVHYHHDGSLETAEIEPFYPMA 138

Query: 118 TMVYFQFVFAAITLILVAGALLGRMNFHAWMLFVPLWLTFSYTITAYSIWCPTGWLAKMG 177
           TMV+FQ VFAAI+L+++AG++L RMNF AWM+FVPLWLTFSYTI A+S+W   G+L + G
Sbjct: 139 TMVWFQCVFAAISLVILAGSVLARMNFKAWMMFVPLWLTFSYTIGAFSLWG-GGFLFQWG 197

Query: 178 IIDYSGGYVIHLASG 192
           ++DYSGGYVIHL+SG
Sbjct: 198 VMDYSGGYVIHLSSG 212


>IMGA|Medtr7g075790.1 Rh-like protein/ammonium transporter
           chr07_pseudomolecule_IMGAG_V3 15272227-15266941 E
           EGN_Mt090430 20090702
          Length = 487

 Score =  226 bits (577), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 123/204 (60%), Positives = 147/204 (72%), Gaps = 21/204 (10%)

Query: 8   PSGLMHDDASPEWMNKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYA 67
           P+   H   SPEW+NK DNAWQ+TAATLVGLQS+PGLVILY SIVKKKWAVNSAFMALYA
Sbjct: 5   PAYQAHLPTSPEWLNKGDNAWQMTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYA 64

Query: 68  FAAVLVCWVGWGYQMSFGNNKFAPFLGKPGVSLDQKFLLDQGFAGK-------------- 113
           FAAVL+CWV   Y+M+FG ++  PF GK   +L QKFL+ +                   
Sbjct: 65  FAAVLICWVLVAYRMAFG-DELLPFWGKGAPALGQKFLVARAKVPASTHYYKNGVDIETP 123

Query: 114 -----FPSATMVYFQFVFAAITLILVAGALLGRMNFHAWMLFVPLWLTFSYTITAYSIWC 168
                FP A++VYFQF FAAIT+IL+AG++LGRMN  AWM FVPLWL FSYT+ A+S+W 
Sbjct: 124 MEEPFFPMASLVYFQFTFAAITMILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWG 183

Query: 169 PTGWLAKMGIIDYSGGYVIHLASG 192
             G+L   G+IDYSGGYVIHL+SG
Sbjct: 184 -GGFLYHWGVIDYSGGYVIHLSSG 206