Jatropha Genome Database

JcCA0311471.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311471.20 - phase: 0 
         (298 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g111390.1 Helix-turn-helix, AraC type chr03_pseudomol...   441   e-124

>IMGA|Medtr3g111390.1 Helix-turn-helix, AraC type
           chr03_pseudomolecule_IMGAG_V3 28262501-28267111 F
           EGN_Mt090430 20090702
          Length = 289

 Score =  441 bits (1133), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/294 (74%), Positives = 248/294 (84%), Gaps = 9/294 (3%)

Query: 1   MSDIISGVDTPVTEAKSGSDGAKVAEVKTWLASQFDAAGKEVPEFEYTSRSIAHLYNLAS 60
           MSD    V T V    SG     ++EVK WL+  F+ AGK VPEFEYT RS++HL++L +
Sbjct: 1   MSDQEGSVSTEV----SG-----ISEVKEWLSKTFEVAGKPVPEFEYTPRSVSHLHHLVT 51

Query: 61  VSQAKTQAANILANDFRLKATEYRAQAARIREILEGVELAQEGLPSNVVGSAQVLANVAN 120
           +S+AK +AA ++A DFRLKA EYR+QAARIREILE V LAQE LPSNVV SAQVLANV+N
Sbjct: 52  LSKAKDEAARLVARDFRLKAAEYRSQAARIREILENVGLAQESLPSNVVASAQVLANVSN 111

Query: 121 LLNIRDTELSSFLVAMGDISLRKTGVEEKRAKAQKESKILLDYTRKAIARLTYLKRTLAQ 180
           LLNIRDTELSSFLVAMGDISLRKTGVEEKRAK  KESK LLDYTRKAIARLTYLKRTLAQ
Sbjct: 112 LLNIRDTELSSFLVAMGDISLRKTGVEEKRAKVHKESKFLLDYTRKAIARLTYLKRTLAQ 171

Query: 181 LEDDVAPSEAQMENWKTNLAIMASKERQYLQQYSNYKAVLNRVGYTPEISHGVLVEMAEH 240
           LED+VAP EAQME+W   L +MA KERQY+QQ +NY+  LNRVGYTPEISH VLV+MAEH
Sbjct: 172 LEDEVAPCEAQMESWSNYLKVMAQKERQYVQQCANYETRLNRVGYTPEISHRVLVDMAEH 231

Query: 241 RKELEKKTKPIMDALRSYKDLPPDKTLAALAIEDKKRQYAAAEKYLEDVLQSAL 294
           RKELE++TKPI+D LRSY+DLPPDK LAALAIEDKKRQYAAAEK LEDVLQ+AL
Sbjct: 232 RKELERQTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKRLEDVLQAAL 285