Jatropha Genome Database

JcCA0311291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311291.10 + phase: 0 /partial
         (175 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g113960.1 Eukaryotic pantothenate kinase chr03_pseudo...   236   4e-63

>IMGA|Medtr3g113960.1 Eukaryotic pantothenate kinase
           chr03_pseudomolecule_IMGAG_V3 28749151-28738871 E
           EGN_Mt090430 20090702
          Length = 899

 Score =  236 bits (602), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 114/168 (67%), Positives = 135/168 (80%), Gaps = 1/168 (0%)

Query: 1   NNRVIDMLVGDIYGGTDYSKIGLSSTTIASSFGKAISDNKEIDDYKPEDVARSLLRMISN 60
           +NR IDMLVGDIYGG DYSKIGLS++TIASSFGK IS+ KE+ DY+PED++ SLLRMIS 
Sbjct: 291 DNRAIDMLVGDIYGGLDYSKIGLSASTIASSFGKTISEKKELQDYRPEDISLSLLRMISY 350

Query: 61  NIGQISYLNALRFGLKRIFFGGFFIQGHPYTMDTISVAVHFWSKGEAKAMFLRHEGFLGV 120
           NIGQI+YLNALRF LKRIFFGGFFI+GH YTMDT+S AV +WS GEA+AMFLRHEGFLG 
Sbjct: 351 NIGQIAYLNALRFKLKRIFFGGFFIRGHAYTMDTLSFAVQYWSNGEAQAMFLRHEGFLGA 410

Query: 121 LGAFMSYAKHSLDDSVVNQSMQSLVNGS-YASDTNYNPQNGDWSDNES 167
           LGAFMSY KH LDD +V+Q ++    G+ Y     + P  GD ++  S
Sbjct: 411 LGAFMSYEKHGLDDLMVHQLVERFPMGAPYTGGKIHGPPLGDLNEKAS 458