Jatropha Genome Database
- JcCA0311281.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0311281.10 - phase: 0 /partial
(702 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|AC234703_2.1 Xeroderma pigmentosum group D protein; ATP-dep... 317 1e-86
IMGA|Medtr2g123170.1 ATP-dependent helicase, DEAH-box; DEXDc2; ;... 317 1e-86
IMGA|Medtr4g009170.1 Xeroderma pigmentosum group D protein; ; ch... 140 3e-33
>IMGA|AC234703_2.1 Xeroderma pigmentosum group D protein;
ATP-dependent helicase, DEAH-box; ; AC234703.1
26378-15197 E EGN_Mt090430 20090702
Length = 1036
Score = 317 bits (812), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 223/657 (33%), Positives = 320/657 (48%), Gaps = 60/657 (9%)
Query: 1 MAVLASRKHYCTNSHVN---GKENLDEEWYAFKVKRPKLLSTSRNAVKVRGHPSLQRGGC 57
M VL SR+ +C + V G+ + +A + +R K + +V +
Sbjct: 123 MTVLGSREQFCIHDEVKLLRGRTQTNACRFACR-RRAKQKRRCNHFNQVLDYLKQNPNLG 181
Query: 58 HEVHDIEDLVKIGKVVKGCSYYAARSMADDAQLVFCPYSYLINPVIRGAMDINITGAILI 117
E DIEDLV IGK C Y+ A+ + ++F PY+YLI+ R A+ I+ + +ILI
Sbjct: 182 EEPVDIEDLVNIGKTSGPCPYHLAKELHKAVDIIFAPYNYLIDRGKRKALQISWSNSILI 241
Query: 118 LDEAHNIEDIARDAGSVDVDEDVLIKLQMELQQLCLLDASIYEPLHDMAQ--DLVSWIKR 175
DEAHN+E I DA S D+ +L E Q L +D +Q D + +K
Sbjct: 242 FDEAHNLESICADAASFDLPSWLLTACISEAQSCVDLLIERRNKSNDKSQNPDDFAILKA 301
Query: 176 RKSTLQKR------EFQNYFSCWTGDKALKELQEANISQQCFPILLDCATKAIKAATDTE 229
L+KR E + G + L + NI+ + P L T A +T E
Sbjct: 302 LLLKLEKRIAEVHIESKELGFTKPGPYIFELLADLNITHKTAPKLKSIVTDA---STLLE 358
Query: 230 LDTDHLSGMSVIVLEGLFSSLTYFFSRNG--CHISDYQLALRRYVKRDKKNPVGDWTCTL 287
D+ S ++ LE + L F R+G H Y++ ++ +G + TL
Sbjct: 359 EDSQEKSTSNICRLETMKDILDIIF-RDGRTSHAKYYRVHVKEAEAWAANGSLGKVSRTL 417
Query: 288 SLWCLNPAVVFSDIAKISL-SVILTSGTLSPMNSFCSELGVHFGTCLEAPHVIDTESQVW 346
S WC NP + + AK + S+ILTSGTLSP++SF EL + F LE PHVI +Q+W
Sbjct: 418 SWWCFNPGIALEEFAKDGVRSIILTSGTLSPLDSFAEELKLDFPIRLENPHVIGP-NQIW 476
Query: 347 AAVISTGPDNYPLNASYKTADEYAFQDALGKTLEEICMIVPAGSLVFFPSYKLMEKLCSR 406
A V+ GP N+SY+T D ++ LG + + IVP G LVFFPSY L+E+
Sbjct: 477 AGVVPVGPLGRTFNSSYRTRDTMEYKQELGNAIVNLTRIVPDGLLVFFPSYYLLEQSIGC 536
Query: 407 WRETGQ-----WARLNARKTLFVEPRGGSQEEDFDSVLKGYYDSIHQRSPQAVGRKRRTK 461
W+ W R+ K +EPR S F S +K Y
Sbjct: 537 WKSLSNDGSSIWERICKNKKPVIEPRESSM---FTSSIKDY------------------- 574
Query: 462 KADLSHLKAMKSTETSEKDGAAFLAVCRGKVSEGMDFSDDNARVVIVVGIPFPNIHDIQV 521
L + T S GA F AVCRGKVSEG+DF+D R V+V G+P+ + D +V
Sbjct: 575 ------LTKLNDTTAS---GAVFFAVCRGKVSEGLDFADHAGRAVVVTGLPYATVTDPKV 625
Query: 522 GLKKNYND----AYKASKNLLSGNEWYCQQAFRALNQAIGRCIRHRFDYGAIVLLDERYK 577
LK+ Y D A S +L+G+EWY QQA RA+NQA+GR IRHR DYGAI+ DER+
Sbjct: 626 RLKREYLDQQSGAQGGSFKVLTGDEWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFT 685
Query: 578 KEQNKIYISKWLRKSIRQYDSYGMSIEGLKSFFRDAKENIGKKMVDLLPNSDTNEGK 634
+ + +SKW++ I+ Y +G + L FFRD + K+ L + N G+
Sbjct: 686 QPHRQSQVSKWIQPHIKCYSRFGEVVFTLTRFFRDGRTRGAAKLSLLEAENGGNLGE 742
>IMGA|Medtr2g123170.1 ATP-dependent helicase, DEAH-box; DEXDc2; ;
chr02_pseudomolecule_IMGAG_V3 29769359-29758178 E
EGN_Mt090430 20090702
Length = 1036
Score = 317 bits (812), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 223/657 (33%), Positives = 320/657 (48%), Gaps = 60/657 (9%)
Query: 1 MAVLASRKHYCTNSHVN---GKENLDEEWYAFKVKRPKLLSTSRNAVKVRGHPSLQRGGC 57
M VL SR+ +C + V G+ + +A + +R K + +V +
Sbjct: 123 MTVLGSREQFCIHDEVKLLRGRTQTNACRFACR-RRAKQKRRCNHFNQVLDYLKQNPNLG 181
Query: 58 HEVHDIEDLVKIGKVVKGCSYYAARSMADDAQLVFCPYSYLINPVIRGAMDINITGAILI 117
E DIEDLV IGK C Y+ A+ + ++F PY+YLI+ R A+ I+ + +ILI
Sbjct: 182 EEPVDIEDLVNIGKTSGPCPYHLAKELHKAVDIIFAPYNYLIDRGKRKALQISWSNSILI 241
Query: 118 LDEAHNIEDIARDAGSVDVDEDVLIKLQMELQQLCLLDASIYEPLHDMAQ--DLVSWIKR 175
DEAHN+E I DA S D+ +L E Q L +D +Q D + +K
Sbjct: 242 FDEAHNLESICADAASFDLPSWLLTACISEAQSCVDLLIERRNKSNDKSQNPDDFAILKA 301
Query: 176 RKSTLQKR------EFQNYFSCWTGDKALKELQEANISQQCFPILLDCATKAIKAATDTE 229
L+KR E + G + L + NI+ + P L T A +T E
Sbjct: 302 LLLKLEKRIAEVHIESKELGFTKPGPYIFELLADLNITHKTAPKLKSIVTDA---STLLE 358
Query: 230 LDTDHLSGMSVIVLEGLFSSLTYFFSRNG--CHISDYQLALRRYVKRDKKNPVGDWTCTL 287
D+ S ++ LE + L F R+G H Y++ ++ +G + TL
Sbjct: 359 EDSQEKSTSNICRLETMKDILDIIF-RDGRTSHAKYYRVHVKEAEAWAANGSLGKVSRTL 417
Query: 288 SLWCLNPAVVFSDIAKISL-SVILTSGTLSPMNSFCSELGVHFGTCLEAPHVIDTESQVW 346
S WC NP + + AK + S+ILTSGTLSP++SF EL + F LE PHVI +Q+W
Sbjct: 418 SWWCFNPGIALEEFAKDGVRSIILTSGTLSPLDSFAEELKLDFPIRLENPHVIGP-NQIW 476
Query: 347 AAVISTGPDNYPLNASYKTADEYAFQDALGKTLEEICMIVPAGSLVFFPSYKLMEKLCSR 406
A V+ GP N+SY+T D ++ LG + + IVP G LVFFPSY L+E+
Sbjct: 477 AGVVPVGPLGRTFNSSYRTRDTMEYKQELGNAIVNLTRIVPDGLLVFFPSYYLLEQSIGC 536
Query: 407 WRETGQ-----WARLNARKTLFVEPRGGSQEEDFDSVLKGYYDSIHQRSPQAVGRKRRTK 461
W+ W R+ K +EPR S F S +K Y
Sbjct: 537 WKSLSNDGSSIWERICKNKKPVIEPRESSM---FTSSIKDY------------------- 574
Query: 462 KADLSHLKAMKSTETSEKDGAAFLAVCRGKVSEGMDFSDDNARVVIVVGIPFPNIHDIQV 521
L + T S GA F AVCRGKVSEG+DF+D R V+V G+P+ + D +V
Sbjct: 575 ------LTKLNDTTAS---GAVFFAVCRGKVSEGLDFADHAGRAVVVTGLPYATVTDPKV 625
Query: 522 GLKKNYND----AYKASKNLLSGNEWYCQQAFRALNQAIGRCIRHRFDYGAIVLLDERYK 577
LK+ Y D A S +L+G+EWY QQA RA+NQA+GR IRHR DYGAI+ DER+
Sbjct: 626 RLKREYLDQQSGAQGGSFKVLTGDEWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFT 685
Query: 578 KEQNKIYISKWLRKSIRQYDSYGMSIEGLKSFFRDAKENIGKKMVDLLPNSDTNEGK 634
+ + +SKW++ I+ Y +G + L FFRD + K+ L + N G+
Sbjct: 686 QPHRQSQVSKWIQPHIKCYSRFGEVVFTLTRFFRDGRTRGAAKLSLLEAENGGNLGE 742
>IMGA|Medtr4g009170.1 Xeroderma pigmentosum group D protein; ;
chr04_pseudomolecule_IMGAG_V3 1397460-1392240 H
EGN_Mt090430 20090702
Length = 907
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/362 (27%), Positives = 163/362 (45%), Gaps = 67/362 (18%)
Query: 292 LNPAVVFSDIAKISLSVILTSGTLSPMNSFCSEL-------GVHFGTCLEAPHVIDTESQ 344
L+ +FS+I + +V+L GTL P+ L +HF +C H++ ES
Sbjct: 564 LSAEKIFSEIVDEAHAVVLVGGTLQPIEETRERLFPWLPPNKLHFFSC---GHIVPPES- 619
Query: 345 VWAAVISTGPDNYPLNASYKTADEYAFQDALGKTLEEICMIVPAGSLVFFPSYKLMEKLC 404
+ +S GP + SY + LG L + +VP G +VFFPS+ ++
Sbjct: 620 ILPIAVSCGPTGRSFDFSYSSRSSADMMQELGLLLCNLVTVVPQGIVVFFPSFDYESRVY 679
Query: 405 SRWRETGQWARLNARKTLFVEPRGGSQEEDFDSVLKGYYDSIHQRSPQAVGRKRRTKKAD 464
W +G R+ RK +F EPR D +SVLK Y D+I+ +P +V +
Sbjct: 680 ENWESSGILERITKRKRVFREPRNNM---DVESVLKEYKDTIY--TPSSVNSE------- 727
Query: 465 LSHLKAMKSTETSEKDGAAFLAVCRGKVSEGMDFSDDNARVVIVVGIPFPNIHDIQVGLK 524
+ GA LAV K+SEG++ SD R +I+VG+P+ + DI++ +
Sbjct: 728 ---------VNQASHTGAVLLAVVGAKLSEGINLSDGMGRCIIMVGLPYASPSDIELLER 778
Query: 525 KNYNDAYKASKNLLS---------------------------GNEWYCQQAFRALNQAIG 557
+ D ++ SK L + G E+Y +A+NQ+IG
Sbjct: 779 IKHIDGFRNSKFLENPGFSASYDVYGGDIQGGFDILRSCSHRGKEYYENLCMKAVNQSIG 838
Query: 558 RCIRHRFDYGAIVLLDERYKKEQNK-------IYISKWLR-KSIRQYDSYGMSIEGLKSF 609
R IRH DY AI+L+D RY + +K + W++ + + +YG + L F
Sbjct: 839 RAIRHINDYAAILLVDTRYASDSSKRSFTHPTTKLPNWIKDRLVSSSRNYGEVHKLLSQF 898
Query: 610 FR 611
F+
Sbjct: 899 FK 900
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 67/145 (46%), Gaps = 22/145 (15%)
Query: 4 LASRKHYCTNSHVNGKEN---LDEEWY---------AFKVKRPKLLSTSRNAVKVRGHPS 51
L SRK+ C N V N ++E A KVK K + +R G P
Sbjct: 230 LGSRKNLCINQEVLALGNSSRINERCLELQKKKKNDATKVKNLKAGTGARRTKASSGCPM 289
Query: 52 L-QRGGCHEVH---------DIEDLVKIGKVVKGCSYYAARSMADDAQLVFCPYSYLINP 101
L +R HE DIEDL +G+ + C YY +RSM LV PY L++
Sbjct: 290 LRKRRLQHEFRNEVSQQGPLDIEDLANLGRTMGTCPYYGSRSMVRRVDLVVLPYQSLLSK 349
Query: 102 VIRGAMDINITGAILILDEAHNIED 126
R A+ +N+ I+I+DEAHN+ D
Sbjct: 350 SSREALGLNLKSNIVIIDEAHNLAD 374