Jatropha Genome Database

JcCA0311161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311161.10 + phase: 0 
         (272 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g100070.1 Tetratricopeptide-like helical; chr01_pseud...   367   e-102

>IMGA|Medtr1g100070.1 Tetratricopeptide-like helical;
           chr01_pseudomolecule_IMGAG_V3 20657029-20659908 E
           EGN_Mt090430 20090702
          Length = 263

 Score =  367 bits (941), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/217 (82%), Positives = 195/217 (89%), Gaps = 6/217 (2%)

Query: 56  LSRRVFLPSVSGIWDALTGG-GGNNPRQAVLKIRRGMSLFREGDVLGSLAEFDKAIELDS 114
           LSRR+FLPSVSGIWDA+TGG G NN  +A+L IRRGMSLFR+G+VLGS+ EFDKAI+LD 
Sbjct: 51  LSRRLFLPSVSGIWDAITGGSGNNNTNEALLAIRRGMSLFRQGEVLGSVVEFDKAIQLDP 110

Query: 115 RQKACRFDLWQRGLSLYYLDRFEEGAKQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEAR 174
           RQKA    LWQRGLSLYYLDRFEEGA+QFRLDVAQNPNDTEESIWCFLCEAQLYGVDEAR
Sbjct: 111 RQKAY---LWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEAR 167

Query: 175 KRFLEVGRDPRPVMREAYNMFKDGGDPEKLVTAFSNGSENEYFYASLYAGLYHESQKKLD 234
           KR+LE   +PRPVMRE YNMFKDGGDPEKLV AFSN  E++YFYASLYAGLY+ESQ + D
Sbjct: 168 KRYLEA--NPRPVMRETYNMFKDGGDPEKLVGAFSNSRESDYFYASLYAGLYYESQNESD 225

Query: 235 AAKFHIVAACKSLYGQRSDDYMAALSKVHCLCRNWSI 271
           AAK HIVAACKSLYGQRSDDYMA+LSKVHCLCRNW+ 
Sbjct: 226 AAKVHIVAACKSLYGQRSDDYMASLSKVHCLCRNWNF 262