Jatropha Genome Database

JcCA0311061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311061.10 + phase: 0 
         (526 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g090040.1 Origin recognition complex subunit 3, N-ter...   460   e-130

>IMGA|Medtr5g090040.1 Origin recognition complex subunit 3,
           N-terminal chr05_pseudomolecule_IMGAG_V3
           35060760-35052256 E EGN_Mt090430 20090702
          Length = 639

 Score =  460 bits (1184), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 245/540 (45%), Positives = 336/540 (62%), Gaps = 28/540 (5%)

Query: 7   ATATDSPHLLAPDVTESNLQPFFVLHEGSSHXXXXXXXXXXXXXXXIDLSPTLTKNGENT 66
           ++ +++   L+   TE++LQPFFVLH+ S                   LSP L  + +  
Sbjct: 4   SSPSNTASQLSSTATENDLQPFFVLHKASPRRKDRTSAGQGKSRKRNKLSPRLPHSAKKQ 63

Query: 67  ETEKVEDSDDHQYLAKRMEAFEAVWSKIESTIKAVLRNLNASSFNEIHQWVCESFKTLTS 126
           E    E+ D +    +++EAF+ VW+KIESTIK VLR LNAS FN I +WV E F T   
Sbjct: 64  EESTDEECDRYLCQQQQIEAFDIVWTKIESTIKDVLRELNASVFNIIQKWVQECFNTTRL 123

Query: 127 FGTPSFHEATRPFPLVQGVISKQVFTGVVLTKNMEFVDDLLTFEELGLHLKSKGCHVANL 186
            G PS   ATR FP++      ++++ +V+T+N+EFVDD++TFEELG+ LKS GCHVA L
Sbjct: 124 VGEPSISVATRSFPVLSNTTPGKLYSALVVTRNIEFVDDIMTFEELGIFLKSHGCHVAML 183

Query: 187 SSLDFSVKNGIGGCLRSLLRQLVMVTLDAPDISILATWYREQGNCNNPIVVIIDDLERCC 246
           SS++FS+KNGI GCL++LLR+ +  + D  DIS LA+WYREQ N N P+V+I++DLERCC
Sbjct: 184 SSMEFSLKNGIAGCLKALLREFLGNSFDPADISALASWYREQENYNKPLVLIVNDLERCC 243

Query: 247 GSVLSDFILMLSEWILKIPVILIMGVATTLDALRNILPSNMIHHLCPCNFILRTPSERMD 306
           GSVL++FILMLSEW++K+P+ LI GVATT+DA RNI PS+ +   CP  F+L TP+ERMD
Sbjct: 244 GSVLTEFILMLSEWVIKVPIFLIFGVATTVDAPRNIFPSHALECFCPSMFMLVTPAERMD 303

Query: 307 AIVEAVLVKQCSGFCISHKVAVFLRSYFVCQDGTITSFIKALKIACAQHFSMESLSFILP 366
           AIVEA+LVK C+ F I HKVA  LR+YF+ QDGT+TSFI+ALK+AC  HFSME LS I  
Sbjct: 304 AIVEAILVKHCTTFNIGHKVAQLLRNYFINQDGTVTSFIRALKVACLLHFSMEPLSLI-- 361

Query: 367 WFXXXXXXXXXXXXNYGLSPEIVLKRAFDLPSCRRNKMAEQNGDILVHGLSELKKLQKQW 426
                         + GLSPE +LK   +LPS  RN M +Q  + +  GLSEL  +QK W
Sbjct: 362 ---QGRILVEDQEGSSGLSPETLLKCMHELPSHARNIMVDQTNESMAEGLSELVTVQKLW 418

Query: 427 STIVM--------------------CLYEVVXXXXXXXXXXXXEALDPELGMLRVSDTHR 466
           ST+V+                    CLYE              E+L+  L   R  D+  
Sbjct: 419 STVVLQLVVNVAELEFIILNFPFVQCLYEAGKYSRVQLLDLFCESLNHVLYPSR--DSVM 476

Query: 467 GLQEDSIVFPTEQDLQKKYTSLRRGGIISQAMHKVRDLPAMQLWKLLKGWEKHTIDIPQV 526
             ++D  +  T    Q +Y+ ++ GG+I Q   +VRDLP  +L +L++ W+K T DI ++
Sbjct: 477 SDEKDHGLSSTNDPFQ-QYSIMQSGGLICQIARRVRDLPPGKLDQLIESWDKITADISEI 535