Jatropha Genome Database
- JcCA0310951.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0310951.10 - phase: 0
(108 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidy... 67 2e-12
IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H... 67 3e-12
IMGA|Medtr3g019580.1 Retrotransposon gag protein chr03_pseudomol... 67 3e-12
IMGA|Medtr7g045780.1 Retrotransposon gag protein chr07_pseudomol... 67 3e-12
IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl t... 66 5e-12
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 66 5e-12
IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy... 63 3e-11
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 62 7e-11
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 58 1e-09
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy... 57 2e-09
IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H... 57 3e-09
IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H... 56 4e-09
IMGA|Medtr3g083290.1 Integrase, catalytic region, putative chr03... 56 4e-09
IMGA|Medtr3g083340.1 Integrase, catalytic region, related chr03_... 56 5e-09
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 52 8e-08
IMGA|Medtr8g005190.1 Integrase, catalytic region, related chr08_... 51 1e-07
IMGA|Medtr6g069740.1 Zinc finger, C4-type chr06_pseudomolecule_I... 50 2e-07
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 50 2e-07
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 49 5e-07
>IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 39272474-39269703 H
EGN_Mt090430 20090702
Length = 847
Score = 67.4 bits (163), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 2 GLSEYYDHVKNQILLMDRFPSVNKVYTMILRVAKQREVHHSLIVLSETTVVILARGGTGY 61
GL+E + VK Q+LLMD P++NKV++++++ +++ L +++V I
Sbjct: 172 GLNEQFSVVKTQVLLMDPLPTLNKVFSLVIQKESNNASVPAMVNLEDSSVSI-------- 223
Query: 62 RRNSYKDGKPMFRKKEFIRKEDRYCEHCKTGGHTKDTCFKLHGYP 106
N+Y + K R K K R+C C HT D C++ HG+P
Sbjct: 224 --NAYDERKSQGRGKGAYNKPTRHCTFCNKTNHTVDFCYQKHGFP 266
>IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 2535883-2538036 H
EGN_Mt090430 20090702
Length = 680
Score = 66.6 bits (161), Expect = 3e-12, Method: Composition-based stats.
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 11/106 (10%)
Query: 2 GLSEYYDHVKNQILLMDRFPSVNKVYTMILRVAKQREVHHSLIVLSETTVVILARGGTGY 61
GL++ + V+ Q+LL+D PS+NKVY++ V ++ H S+ LS +T T
Sbjct: 191 GLNDQFSVVRTQVLLLDPLPSMNKVYSL---VVQEESNHASITSLSVST-------DTSI 240
Query: 62 RRNSYKDGKPMFRKKEFI-RKEDRYCEHCKTGGHTKDTCFKLHGYP 106
+ N+ ++ KP R K F K R C C HT D C+ HGYP
Sbjct: 241 QINATENRKPQGRGKSFYSNKPTRLCTFCNRTNHTVDFCYLKHGYP 286
>IMGA|Medtr3g019580.1 Retrotransposon gag protein
chr03_pseudomolecule_IMGAG_V3 4112343-4111299 H
EGN_Mt090430 20090702
Length = 334
Score = 66.6 bits (161), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 8/110 (7%)
Query: 1 MGLSEYYDHVKNQILLMDRFPSVNKVYTMILRVAKQREVHHSLIV----LSETTVVILAR 56
+GL+E Y V +Q+LLMD P +N+V++MI++ ++R+ + +IV + E T L
Sbjct: 149 IGLNEEYQSVTSQVLLMDPLPQINRVFSMIMQ--QERKAQYGIIVAPASVVEDTSARLVN 206
Query: 57 GGTGYRRNSYKDGKPMFRKKEFIRKEDRYCEHCKTGGHTKDTCFKLHGYP 106
R+ G F+ + R R C C HT +TC+K HG+P
Sbjct: 207 AVDAQRQFGRGRGNAGFQGRG--RGNGRVCNFCGRSNHTMETCYKKHGFP 254
>IMGA|Medtr7g045780.1 Retrotransposon gag protein
chr07_pseudomolecule_IMGAG_V3 11034924-11036399 H
EGN_Mt090430 20090702
Length = 491
Score = 66.6 bits (161), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 14/109 (12%)
Query: 1 MGLSEYYDHVKNQILLMDRFPSVNKVYTMILRVAKQREVHHSLIV---LSETTVVILARG 57
+GL++ + VK QILLMD PS+NKVY++++ Q E +H+ I+ E+ +++
Sbjct: 147 IGLNDQFSIVKTQILLMDPLPSLNKVYSLVI----QEESNHAPILSLPADESNILV---- 198
Query: 58 GTGYRRNSYKDGKPMFRKKEFIRKEDRYCEHCKTGGHTKDTCFKLHGYP 106
+ SY GK + + + R+C C HT DTC+ HG+P
Sbjct: 199 NVADSKKSYGRGKGYYSNQ---KNSSRHCTFCNRTNHTIDTCYLKHGFP 244
>IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235005.1 3152-790 H
EGN_Mt090430 20090702
Length = 772
Score = 65.9 bits (159), Expect = 5e-12, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 1 MGLSEYYDHVKNQILLMDRFPSVNKVYTMILRVAKQREVHHSLIV---LSETTVVILARG 57
+GL++ + VK QILLMD PS+NKVY++++ Q E +H+ I+ E+ +++ A
Sbjct: 147 LGLNDQFSVVKTQILLMDPLPSLNKVYSLVI----QEESNHTPILSLPTEESNILVNATD 202
Query: 58 GTGYRRNSYKDGKPMFRKKEFIRKEDRYCEHCKTGGHTKDTCFKLHGYP 106
+ SY GK + + + R+C C HT DTC+ HG+P
Sbjct: 203 S----KKSYGRGKGYYGNQ---KNSSRHCTFCNRSNHTIDTCYLKHGFP 244
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 65.9 bits (159), Expect = 5e-12, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 1 MGLSEYYDHVKNQILLMDRFPSVNKVYTMILRVAKQREVHHSLIV---LSETTVVILARG 57
+GL++ + VK QILLMD PS+NKVY++++ Q E +H+ I+ E+ +++ A
Sbjct: 147 LGLNDQFSVVKTQILLMDPLPSLNKVYSLVI----QEESNHTPILSLPTEESNILVNATD 202
Query: 58 GTGYRRNSYKDGKPMFRKKEFIRKEDRYCEHCKTGGHTKDTCFKLHGYP 106
+ SY GK + + + R+C C HT DTC+ HG+P
Sbjct: 203 S----KKSYGRGKGYYGNQ---KNSSRHCTFCNRSNHTIDTCYLKHGFP 244
>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
EGN_Mt090430 20090702
Length = 920
Score = 63.2 bits (152), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 62/109 (56%), Gaps = 20/109 (18%)
Query: 2 GLSEYYDHVKNQILLMDRFPSVNKVYTMILRVAKQREVHHSLIVLSETTVVILARGGTGY 61
GL++ +D V++QILLM+ P++NK+++M+++ +Q ++ I + ++T+++ + G +
Sbjct: 207 GLNDSFDLVRSQILLMNPLPTINKIFSMVMQHERQFKIS---IPVEDSTILVNSAGKSQG 263
Query: 62 R----RNSYKDGKPMFRKKEFIRKEDRYCEHCKTGGHTKDTCFKLHGYP 106
R NS +GK R C C GHT D C++ HG+P
Sbjct: 264 RGRGNGNSNSNGK-------------RSCSFCGRDGHTIDICYRKHGFP 299
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 62.0 bits (149), Expect = 7e-11, Method: Composition-based stats.
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 2 GLSEYYDHVKNQILLMDRFPSVNKVYTMILRVAKQREVHHSLIVLSETTVVILARGGTGY 61
GL++ + VK QILL+D PS+NKVY+M+++ S+ V ++ + + A
Sbjct: 194 GLNDQFSVVKTQILLLDPLPSLNKVYSMVIQEESNNSSIPSVSVSDDSNIQLNASDA--- 250
Query: 62 RRNSYKDGKPMFRKKEFIRKEDRYCEHCKTGGHTKDTCFKLHGYP 106
RN GK K R+C CK HT D C++ HGYP
Sbjct: 251 -RNFQPRGKGPSSGSN--NKPTRFCSFCKRTNHTVDFCYQKHGYP 292
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 57.8 bits (138), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 3 LSEYYDHVKNQILLMDRFPSVNKVYTMILRVAKQREVHHSLIVLSETTVVILARGGTGYR 62
L++ + V+ Q+LL+D PS+NKVY+++++ SL V +T++ I A ++
Sbjct: 191 LNDQFSVVRTQVLLLDPLPSLNKVYSLVVQEESNHASLPSLSVADDTSIQINATDTRRFQ 250
Query: 63 R--NSYKDGKPMFRKKEFIRKEDRYCEHCKTGGHTKDTCFKLHGYP 106
R SY KP R C C HT D C+ HG+P
Sbjct: 251 RRGKSYSQPKPT-----------RLCTFCNRTNHTVDFCYLKHGFP 285
>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
EGN_Mt090430 20090702
Length = 790
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 26/122 (21%)
Query: 1 MGLSEYYDHVKNQILLMDRFPSVNKVYTMILRVAKQREVHHSLIV------LSETTVVIL 54
+GL+E Y V +Q+LLMD P +N+V++++++ ++R++ ++++ L + T ++
Sbjct: 194 IGLNEEYQGVASQVLLMDPMPPINRVFSLVMQ--QERKLQYAVVSHVQNTSLEDNTGLVN 251
Query: 55 A----------RGGTGYRRNSYKDGKPMFRKKEFIRKEDRYCEHCKTGGHTKDTCFKLHG 104
A RGGT Y+ R R+C C+ HT +TC+K HG
Sbjct: 252 AVNGQKQFGRGRGGTSYQGRG--------RGNGRGNGNGRFCTFCERTNHTVETCYKKHG 303
Query: 105 YP 106
YP
Sbjct: 304 YP 305
>IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 10761249-10763836 E
EGN_Mt090430 20090702
Length = 772
Score = 56.6 bits (135), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 14/109 (12%)
Query: 2 GLSEYYDHVKNQILLMDRFPSVNKVYTMILRVAKQREVHHSLIVLSETTVVILARGGTGY 61
GL++ + VK Q+LL+D PS+NKVY+M+++ SL ++++++
Sbjct: 195 GLNDSFSVVKTQVLLIDPLPSINKVYSMVIQEESNIIPPTSLASNEDSSILV-------- 246
Query: 62 RRNSYKDGKPMFRKKEF----IRKEDRYCEHCKTGGHTKDTCFKLHGYP 106
N+ KP R K + RYC C+ HT + C+ H +P
Sbjct: 247 --NASDARKPFLRGKSSGTSQSKNNSRYCTFCRRNNHTVEYCYLKHDFP 293
>IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 31006465-31009370 H
EGN_Mt090430 20090702
Length = 883
Score = 56.2 bits (134), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 20/106 (18%)
Query: 2 GLSEYYDHVKNQILLMDRFPSVNKVYTMILRVAKQREVHHSLIVLSETTVVILARGGTGY 61
GL++ +D V++QILLM+ P++NK+++M+++ +Q ++ I + ++T+++ + G +
Sbjct: 160 GLNDSFDLVRSQILLMNPLPTINKIFSMVMQHERQFKIS---IPVDDSTILVNSAGKSQG 216
Query: 62 R----RNSYKDGKPMFRKKEFIRKEDRYCEHCKTGGHTKDTCFKLH 103
R NS +GK R C C GHT D C++ H
Sbjct: 217 RGRGNGNSNSNGK-------------RSCSFCGRDGHTIDICYRKH 249
>IMGA|Medtr3g083290.1 Integrase, catalytic region, putative
chr03_pseudomolecule_IMGAG_V3 19547512-19547931 H
EGN_Mt090430 20090702
Length = 139
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 59/106 (55%), Gaps = 13/106 (12%)
Query: 2 GLSEYYDHVKNQILLMDRFPSVNKVYTMILRVAKQREVHHSLIVLSET-TVVILARGGTG 60
GL++ + V+ Q+LLM+ P +N+VY+++++ + ++V S+I+++ T ++ G
Sbjct: 20 GLNDQFSIVQTQVLLMEPLPCLNRVYSLVIQ-EESKDVFESVILMNPTLDNSADSKKFPG 78
Query: 61 YRRNSYKDGKPMFRKKEFIRKEDRYCEHCKTGGHTKDTCFKLHGYP 106
++S+ G + + C C GHT DTC+K HG+P
Sbjct: 79 KGKSSFSSGY-----------KSKLCTFCGRHGHTVDTCYKKHGFP 113
>IMGA|Medtr3g083340.1 Integrase, catalytic region, related
chr03_pseudomolecule_IMGAG_V3 19557937-19559015 H
EGN_Mt090430 20090702
Length = 294
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 59/106 (55%), Gaps = 13/106 (12%)
Query: 2 GLSEYYDHVKNQILLMDRFPSVNKVYTMILRVAKQREVHHSLIVLSET-TVVILARGGTG 60
GL++ + V+ Q+LLM+ P +N+VY+++++ + ++V S+I+++ T ++ G
Sbjct: 20 GLNDQFSIVQTQVLLMEPLPCLNRVYSLVIQ-EESKDVFESVILMNPTLDNSADSKKFPG 78
Query: 61 YRRNSYKDGKPMFRKKEFIRKEDRYCEHCKTGGHTKDTCFKLHGYP 106
++S+ G + + C C GHT DTC+K HG+P
Sbjct: 79 KGKSSFSSGY-----------KSKLCTFCGRHGHTVDTCYKKHGFP 113
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 52.0 bits (123), Expect = 8e-08, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
Query: 1 MGLSEYYDHVKNQILLMDRFPSVNKVYTMILRVAKQREVHHSLIVLSETTVVILARGGTG 60
+GL++ ++ VK QIL++D PS+N+VY +++ Q E ++ + S T +
Sbjct: 188 IGLNDQFNVVKTQILMLDPIPSINRVYYLVV----QEESNNLSLASSITEPFSVV----- 238
Query: 61 YRRNSYKDGKPMFRKKEFIR--KEDRYCEHCKTGGHTKDTCFKLHGYPKW 108
N+ KP R + + K R C C HT D C++ HG+P +
Sbjct: 239 ---NAADSRKPQGRGRGYSNGYKPPRQCTFCGKSNHTVDYCYQKHGHPNF 285
>IMGA|Medtr8g005190.1 Integrase, catalytic region, related
chr08_pseudomolecule_IMGAG_V3 117969-116692 E
EGN_Mt090430 20090702
Length = 237
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 15/109 (13%)
Query: 2 GLSEYYDHVKNQILLMDRFPSVNKVYTMILR----VAKQREVHHSLIVLSETTVVILARG 57
GL++ Y +V+ QILLMD PS++K Y+++++ +Q + V S +T +G
Sbjct: 46 GLNDNYTNVRTQILLMDPLPSISKTYSLVIQQDSTPTEQPSESNVFNVNSSSTSSAQHKG 105
Query: 58 GTGYRRNSYKDGKPMFRKKEFIRKEDRYCEHCKTGGHTKDTCFKLHGYP 106
G R K K C +C HT + C+ HG+P
Sbjct: 106 NHGLGRGRGKG-----------PKTSMLCSNCNKTNHTVENCYFKHGFP 143
>IMGA|Medtr6g069740.1 Zinc finger, C4-type
chr06_pseudomolecule_IMGAG_V3 12973766-12974997 H
EGN_Mt090430 20090702
Length = 366
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 2 GLSEYYDHVKNQILLMDRFPSVNKVYTMILRVAKQREVHHSLIVLSETTV-VILARGGTG 60
GL++ ++ VK Q+L++D PS+NKVY+++++ + S I + V V+ +R G
Sbjct: 169 GLNDQFNVVKTQVLMLDPLPSINKVYSLVVQEESNNQSLSSPIDEPLSIVNVVESRKPQG 228
Query: 61 YRRNSYKDGKPMFRKKEFIRKEDRYCEHCKTGGHTKDTCFKLHGYPKW 108
R KP R+C C HT + ++ HG+P +
Sbjct: 229 RGRGYSHSFKP-----------PRHCSFCGKSNHTVEFFYQKHGHPNF 265
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 50.1 bits (118), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 14/109 (12%)
Query: 2 GLSEYYDHVKNQILLMDRFPSVNKVYTMILRVAKQREVHHSLIVLSETTVVILARGGTGY 61
GL++ ++ VK Q+L++D PS+NKVY++++ +E ++L + S T
Sbjct: 189 GLNDQFNVVKTQVLMLDPLPSINKVYSLVV-----QEESNNLSLTSSINEPFSVVNATNS 243
Query: 62 RRNSYKDGKPMFRKKEFIR--KEDRYCEHCKTGGHTKDTCFKLHGYPKW 108
R KP R + + + R C C HT + C++ HG+P +
Sbjct: 244 R-------KPQGRGRGYSSGFRPPRQCTFCGKTNHTVEYCYQKHGHPNF 285
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 12/109 (11%)
Query: 2 GLSEYYDHVKNQILLMDRFPSVNKVYTMILRVAKQREVHHSLIVLSETTVVILARGGTGY 61
GL++ + VK Q+LL++ P +NKVY++++ Q E ++SL + I A +
Sbjct: 190 GLNDNFGVVKTQVLLLNPLPPLNKVYSLVV----QEESNNSL------PISISASDDSNI 239
Query: 62 RRNSYKDGKPMFRKKEFI--RKEDRYCEHCKTGGHTKDTCFKLHGYPKW 108
+ N+ + K R K F+ +K +RYC C HT D C++LHG+P +
Sbjct: 240 QLNASEVKKSQGRGKGFVNSQKPNRYCTFCHKTNHTVDFCYQLHGHPSF 288