Jatropha Genome Database

JcCA0310901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310901.10 + phase: 0 
         (244 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g143600.1 Harpin-induced 1 chr07_pseudomolecule_IMGAG...   143   9e-35
IMGA|Medtr2g121250.1 Harpin-induced 1 chr02_pseudomolecule_IMGAG...    60   7e-10
IMGA|Medtr3g139940.1 Harpin-induced 1 chr03_pseudomolecule_IMGAG...    51   6e-07

>IMGA|Medtr7g143600.1 Harpin-induced 1 chr07_pseudomolecule_IMGAG_V3
           34496788-34498068 H EGN_Mt090430 20090702
          Length = 244

 Score =  143 bits (360), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 128/235 (54%), Gaps = 8/235 (3%)

Query: 13  VLQKPPGYKDPS---KPVPRPLPRKAVLPPAFQPRKVRRTCCGRIWCIVYVSVAAXXXXX 69
           +L KPP Y+DP+   KP+P    R   LPP+F+P+  +R  C    C   +         
Sbjct: 12  ILPKPPCYRDPNIQQKPLPT---RNPSLPPSFRPKPKKRNYCRLFCCTFCIIFLILFFLF 68

Query: 70  XXXXXXXXXWFDPKSPAFHVQSFKISTFDIATKTDGTYLNAATVARVEVRNPNPRLTYRY 129
                     + P  P FH+ SF++ +F+I TK+DG YL+A T+  VEV+N N ++ +R+
Sbjct: 69  ILAAAVIYILYQPSIPEFHLGSFRVPSFNITTKSDGAYLDANTITMVEVKNRNAKMVWRF 128

Query: 130 GVSEVEITVGKEQQTELGSTSLAGFIQAKKNTTSLKIATRVKNAVIEDGVGSRLKSHFKS 189
             S V+I         LGST +A F    KN T++K  T+V++  + +    +LKS F S
Sbjct: 129 EQSSVQIW-ADNGDLNLGSTKVAAFDVKVKNKTAVKGETKVRHEELNEKQRRKLKSAFSS 187

Query: 190 RSMVVNLRAKTTVGLGVMKGLEIGMLGLDVLCDGITLKEIDGGNMPKCTIRTLKW 244
           +++V ++  KT   + V +G +  M+G+ V+C  +TL++I  G+MP C+    KW
Sbjct: 188 KALVPSVEVKTRTSVRV-QGWKSMMIGVTVVCGDVTLRQIQNGDMPPCSFTVFKW 241


>IMGA|Medtr2g121250.1 Harpin-induced 1 chr02_pseudomolecule_IMGAG_V3
           28737701-28736199 E EGN_Mt090430 20090702
          Length = 260

 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 12/148 (8%)

Query: 80  FDPKSPAFHVQSFKISTFDIATKTDGTYLNAATVARVEVRNPNPRLTYRYGVSEVEITVG 139
           + P  P+F V S K+S  ++   T  + LN+     +  +NPN  +T+ Y  + + I   
Sbjct: 87  YRPHRPSFTVTSLKLSYLNL---TSSSTLNSKFNVNITAKNPNKHITFVYQPTTITIL-- 141

Query: 140 KEQQTELGSTSLAGFIQAKKNTTSLKIATRVKNAVIEDGVGSRLKSHFKSR---SMVVNL 196
                 +G  ++  F   KKNTT LK +       +E    + LK + KS+   ++ V L
Sbjct: 142 -SNNINIGEGTIPSFKHGKKNTTLLKSSISSTGLALESEASTELKKNMKSKNGLALKVKL 200

Query: 197 RAKTTVGLGVMKGLEIGMLGLDVLCDGI 224
             K    +G MK   +   G+ V CDG+
Sbjct: 201 DTKVKAKMGKMKTPNV---GIRVTCDGV 225


>IMGA|Medtr3g139940.1 Harpin-induced 1 chr03_pseudomolecule_IMGAG_V3
           36134992-36133775 F EGN_Mt090430 20090702
          Length = 260

 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 70/176 (39%), Gaps = 7/176 (3%)

Query: 50  CCGRIWCIVYVSVAAXXXXXXXXXXXXXXWFDPKSPAFHVQSFKISTFDIATKTDG-TYL 108
           CC   W I+ V  AA               + P  P F + + +I+  ++ T  D  ++L
Sbjct: 58  CCCCFWTILTVLAAAFLVAIVGAVFYVL--YHPHQPQFSITNLRIAKMNLKTPADSPSHL 115

Query: 109 NAATVARVEVRNPNPRLTYRYGVSEVEITVGKEQQTELGSTSLAGFIQAKKNTTSLKIAT 168
                  +  +NPN  L + Y   E           ++G+ SL  F   K N TSL+   
Sbjct: 116 TTLFNLTLIAKNPNNHLVFFY---EPFTVTAFSDSVQIGNGSLPAFDSGKNNQTSLRSVL 172

Query: 169 RVKNAVIEDGVGSRLKSHFKSRSMVVNLRAKTTVGLGVMKGLEIGMLGLDVLCDGI 224
                +  + + S      K R   V ++  T V +  M+ L+   +G+ V C+GI
Sbjct: 173 SNSQDLDTESLASLRSGLKKKRGFPVTIQMDTKVKMK-MEWLKSKKVGIRVTCEGI 227