Jatropha Genome Database

JcCA0310831.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310831.20 - phase: 0 
         (569 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g121790.1 23S rRNA methyltransferase/RumA; Methyltran...   793   0.0  
IMGA|Medtr4g081610.1 RNA-binding region RNP-1 (RNA recognition m...    80   2e-15

>IMGA|Medtr2g121790.1 23S rRNA methyltransferase/RumA;
           Methyltransferase small chr02_pseudomolecule_IMGAG_V3
           28983923-28977319 E EGN_Mt090430 20090702
          Length = 560

 Score =  793 bits (2049), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/497 (74%), Positives = 425/497 (85%), Gaps = 3/497 (0%)

Query: 76  NNSNSFFPKRGQTLELVCESLAFKGKGVCKVPDTGFVLMCDRALPGERFIGRVTRRKGSY 135
           N S S+FPKRGQTLEL+CESLAFKGKG+CKV DTGFV+MCDRALPGERFIGR+TR+KG+Y
Sbjct: 64  NTSTSYFPKRGQTLELLCESLAFKGKGLCKVTDTGFVVMCDRALPGERFIGRITRKKGNY 123

Query: 136 AEVTKVKTLSPHLDIVDAPCEYAAYCGGCKTQNLVYEAQLKAKEQQVHGLVVNVGKFSDK 195
           AE TKV+TL+P   +VDAPC Y  +CGGCKTQNL Y AQ+ AKE+QV  LV++VG+FS K
Sbjct: 124 AEATKVETLTPPFHVVDAPCVYVPHCGGCKTQNLAYLAQVNAKEEQVRDLVIHVGRFSQK 183

Query: 196 DPEFYSIMKPIVPCDFQFHYRNKMEFSFGPQKWLPKELIGEKQ--EGSESYALGLHAPGF 253
           + E + IMKPIVPCD QFHYRNKMEFSFGP KWLPKE + E+    GSE+Y+LGLH PGF
Sbjct: 184 ELELHGIMKPIVPCDIQFHYRNKMEFSFGPYKWLPKESLHERNVDAGSENYSLGLHVPGF 243

Query: 254 FDKVLNVDGCLLQSEPANTVLATVQDCWRD-SVGLTPYNVYSHAGFLKHLMLRTGRNAES 312
           FDK++NV+ CLLQ++PAN VLA +Q+CWRD  +G +PYNV+SH GFLKHLMLR+GR+  +
Sbjct: 244 FDKIINVEKCLLQTDPANKVLAAIQECWRDPQLGFSPYNVHSHKGFLKHLMLRSGRDVMT 303

Query: 313 GSLELMVNFVTSSYKPELLKPLMEKISAIPEXXXXXXXXXXXXXXXXXXEEEYTLYGKST 372
           G  E+MVNFVTSSYKP+LLK L++K+SA PE                  EEEYTL+GKS+
Sbjct: 304 GLPEVMVNFVTSSYKPDLLKVLVDKVSAFPEVVSIMNNVNTSVGNTSVGEEEYTLHGKSS 363

Query: 373 ITEVLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSEIVLDLFCGTGTIGLTL 432
           ITE LRGLTFQISANSFFQTNTHQAEVLYKLIE+CAG+RGDGSE+VLDLFCGTGTIGLTL
Sbjct: 364 ITETLRGLTFQISANSFFQTNTHQAEVLYKLIEECAGIRGDGSEVVLDLFCGTGTIGLTL 423

Query: 433 ARGAKHVYGYEVVPQAISDAFRNAELNGITNATFVQGDLNKIGENFGNNFPKPDVVISDP 492
           AR  KHVYGYEVVPQAI+DA  NA++NGI NATF++GDLNKI  NFG NFPKPD+VISDP
Sbjct: 424 ARSVKHVYGYEVVPQAIADARLNAKINGIQNATFIEGDLNKIDANFGKNFPKPDIVISDP 483

Query: 493 NRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVKEQNIKGCYKLKSLQPVD 552
           NRPGMHMKLIKFLL L+APRIVYVSCNPATCARDLDYLCHGV E NI+GCYKL SLQPVD
Sbjct: 484 NRPGMHMKLIKFLLNLRAPRIVYVSCNPATCARDLDYLCHGVAELNIEGCYKLISLQPVD 543

Query: 553 MFPHTPHIECVCLLELC 569
           MFPHTPHIECVCLLELC
Sbjct: 544 MFPHTPHIECVCLLELC 560


>IMGA|Medtr4g081610.1 RNA-binding region RNP-1 (RNA recognition
           motif); Methyltransferase small;
           (Uracil-5)-methyltransferase
           chr04_pseudomolecule_IMGAG_V3 17090085-17095137 E
           EGN_Mt090430 20090702
          Length = 618

 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 55/95 (57%), Gaps = 2/95 (2%)

Query: 373 ITEVLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRGDGSEIVLDLFCGTGTIGLTL 432
           I + +  L F IS  SFFQ NT  AE LY L  D A L  D   ++ D+ CGTG IGLTL
Sbjct: 332 IHDYISNLRFSISPTSFFQVNTLAAEKLYSLAGDWACLGPD--TLLFDICCGTGAIGLTL 389

Query: 433 ARGAKHVYGYEVVPQAISDAFRNAELNGITNATFV 467
           A     V G E+   A+SDA +NAE NGI N  FV
Sbjct: 390 AHRVGMVIGIEMNAAAVSDAHKNAENNGIKNCRFV 424



 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 45/109 (41%), Gaps = 28/109 (25%)

Query: 487 VVISDPNRPGMHMKLIKFL-LKLKAPRIVYVSCNPATCARDLDYLC-------------- 531
           V I DP R G+H  +IK L    +  R+VY+SCNP +   +   LC              
Sbjct: 509 VAIVDPPRAGLHPTVIKALRTHTRLRRLVYISCNPESLVANAIELCTPSPTEMERGNKDN 568

Query: 532 -------------HGVKEQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 567
                        H  K   I   +K      VD+FPHTPH E V LLE
Sbjct: 569 RGWRRMSSAGLARHRAKSMPISEAFKPVKAMAVDLFPHTPHCELVMLLE 617