Jatropha Genome Database

JcCA0310221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310221.20 + phase: 0 
         (524 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g125380.1 Dehydroquinase class I; Shikimate/quinate 5...   610   e-175
IMGA|Medtr7g139990.1 Bifunctional 3-dehydroquinate dehydratase/s...    74   2e-13
IMGA|Medtr7g140010.1 Dehydroquinase class I chr07_pseudomolecule...    69   7e-12

>IMGA|Medtr4g125380.1 Dehydroquinase class I; Shikimate/quinate
           5-dehydrogenase; chr04_pseudomolecule_IMGAG_V3
           29552562-29559339 E EGN_Mt090430 20090702
          Length = 503

 Score =  610 bits (1572), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 306/497 (61%), Positives = 383/497 (77%), Gaps = 21/497 (4%)

Query: 17  LLCTPLMGTTVDQMLIEMQKAKEIGADVVEIRLDCLRNFSPTQDLEILIKRS-PLPTLVT 75
           L+C P+MG T+ +M+ ++QKAK  GAD+VEIRLD L+ F+P+QDL   +++   LP L T
Sbjct: 5   LICVPIMGETIQKMIADIQKAKLNGADLVEIRLDSLKTFNPSQDLNTFMQQHHSLPFLFT 64

Query: 76  YRPVWEGGQYEGDETKRQDALRLAMQLGANYVDVELEVAHDFNSSIYGKKPDNFRVIVSS 135
           YRP WEGG Y+GDE +R DAL+LAM+L A+Y+DVEL+VAH F  SI GK  +  +VIVSS
Sbjct: 65  YRPKWEGGMYDGDENQRLDALQLAMELEADYIDVELKVAHQFYDSIRGKTYNKTKVIVSS 124

Query: 136 HNFHNTPSAEAIANLVARIQATGADIIKIATTALDITDCARIFRIMVHSQIPVIGIVMGE 195
           HN+  TPS E + NLVARIQATGADI+KIATTA++ITD AR+F+IMVHSQ+P IG+VMG+
Sbjct: 125 HNYQQTPSVEDLGNLVARIQATGADIVKIATTAVEITDVARMFQIMVHSQVPFIGLVMGD 184

Query: 196 RGQISRLLSPKFGGYLTYGALEAGAISAPGQPTVKDLLDLYNFRLIRPDTKVYGIIGKPV 255
           RG ISR+L  KFGGYLT+G LE+G +SAPGQPT+KDLL LYNFR I P+TKV+GI+GKPV
Sbjct: 185 RGLISRILCAKFGGYLTFGTLESGVVSAPGQPTLKDLLHLYNFRQIGPNTKVFGIVGKPV 244

Query: 256 GHSKSPLLFNAAFKSVGLNAVYMHFLVDDVEKFFNTYSSVDFASGCSCTIPHKEVALKCM 315
            H                  +++  LVDD+  F  TYSS DF  G S TIPHKE ALKC 
Sbjct: 245 SH------------------IFVFLLVDDLANFLRTYSSTDFV-GFSVTIPHKEAALKCC 285

Query: 316 DEIDPIARKIGAINNIVRRP-DGTLMAYNTDYIGAISAIEDGLRELNGAVPAGTSPLKGK 374
           DE+DP+A+ IG +N +VRRP DG L+ YNTDY+GAISAIEDGLR  +       SPL GK
Sbjct: 286 DEVDPVAKSIGVVNCVVRRPTDGKLIGYNTDYVGAISAIEDGLRGKHNDSGTAVSPLVGK 345

Query: 375 LFVVLGAGGAGKSLAYGAAQKGARVVVANRTYERAKELADKVGGQAMTLAEAEHFHPEDG 434
           LFVV+GAGGAGK+LAYGA +KGAR+V+ANRTY+RA+ELAD +GG A+TL + +++HPEDG
Sbjct: 346 LFVVIGAGGAGKALAYGAKEKGARIVIANRTYDRARELADVIGGDALTLNDLDNYHPEDG 405

Query: 435 MVLANTTSVGMKPNYDATPLPKHVLKHYCLAFDAIYTPKDTRLLREAKESGAVIVYGTEM 494
           M+LANTTS+GM+P  D TP+ KH LK Y L FDA+YTPK TRLL+EA+ESGA IV G EM
Sbjct: 406 MILANTTSIGMQPKVDETPISKHALKFYSLVFDAVYTPKMTRLLKEAEESGATIVTGLEM 465

Query: 495 LIRQGFEQYKNFTGLPA 511
            I Q + QY+++TGLP 
Sbjct: 466 FIGQAYRQYEHYTGLPG 482


>IMGA|Medtr7g139990.1 Bifunctional 3-dehydroquinate
           dehydratase/shikimate dehydrogenase,chloroplast
           precursor, related chr07_pseudomolecule_IMGAG_V3
           33617979-33617312 H EGN_Mt090430 20090702
          Length = 99

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 55/85 (64%), Gaps = 2/85 (2%)

Query: 370 PLKGKLFVVLGAGGAGKSLAYGAAQKGARVVVANRTYERAKELADKVGGQAMTLAEAEHF 429
           PL G+LFV   AGGAGK+LA+GA  +GAR+V+ +  +++++ LA  V G+  +     +F
Sbjct: 9   PLDGRLFV--RAGGAGKALAFGAKTRGARIVIFDIDFDKSRSLACAVFGEVQSYKNLVNF 66

Query: 430 HPEDGMVLANTTSVGMKPNYDATPL 454
            P  G +LAN T +GM P+ D  P+
Sbjct: 67  QPVKGAILANATPIGMHPDTDRIPV 91


>IMGA|Medtr7g140010.1 Dehydroquinase class I
           chr07_pseudomolecule_IMGAG_V3 33621441-33619831 H
           EGN_Mt090430 20090702
          Length = 142

 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 29/134 (21%)

Query: 118 NSSIYGKKPDNFRVIVSSHNFHNTPSAEAIANLVARIQATGADIIKIATTALDITDCARI 177
           N +I+GK      +I S      TP  E +  LVA +QATG DIIK+             
Sbjct: 17  NHNIHGK------IIASCFVDGITPPTEELLQLVALMQATGTDIIKL------------- 57

Query: 178 FRIMVHSQIPVIGIVMGERGQISRLLSPKFGGYLTYGALEAGAISAPGQPTVKDLLDLYN 237
                   +P+I   +GE G IS+ L PKFGG+   G+L    I  PG P++  L + Y 
Sbjct: 58  --------VPLIAYSIGESGLISQFLCPKFGGFFVCGSLARNPI--PGLPSLHSLQEAYK 107

Query: 238 FRLIRPDTKVYGII 251
              +  +T+V+G+I
Sbjct: 108 LEHVNANTEVFGLI 121