Jatropha Genome Database

JcCA0310221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310221.10 - phase: 0 
         (260 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g022080.1 H+-transporting two-sector ATPase, D subuni...   419   e-118

>IMGA|Medtr4g022080.1 H+-transporting two-sector ATPase, D subunit
           chr04_pseudomolecule_IMGAG_V3 4391520-4393095 E
           EGN_Mt090430 20090702
          Length = 259

 Score =  419 bits (1077), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/262 (79%), Positives = 233/262 (88%), Gaps = 5/262 (1%)

Query: 1   MSGQSQRLNVVPTVTMLAVMKARLVGATRGHALLKKKSDALTVQFRQILKKIVTAKESMG 60
           MSGQSQRLNVVPTVTML V+KARLVGATRGHALLKKKSDALTVQFRQILKKIV+ KESMG
Sbjct: 1   MSGQSQRLNVVPTVTMLGVVKARLVGATRGHALLKKKSDALTVQFRQILKKIVSTKESMG 60

Query: 61  DIMKSSAFALTEAKYVAGENVKHVVLENVQSASLKVRSRQENVAGVKLPKFEYFTEGE-T 119
           DIMK+S+FALTEAKYVAG+N+KHVVLENV+ ASL+VRSR ENVAGVKLPKF+Y  +GE T
Sbjct: 61  DIMKTSSFALTEAKYVAGDNIKHVVLENVKEASLRVRSRTENVAGVKLPKFDYSADGEAT 120

Query: 120 KNDLTGLARGGQQVQACRAAYIKSIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVK 179
           KNDLTGLARGGQQVQ CR AYIK+IEVLVELASLQTSFLTLD+AIKTTNRRVNALENVVK
Sbjct: 121 KNDLTGLARGGQQVQQCRVAYIKAIEVLVELASLQTSFLTLDDAIKTTNRRVNALENVVK 180

Query: 180 PRIENTINYIKGELDELEREDFFRLKKVQGYKKREIERQLXXXXXXXXXXXXXXVSLQKG 239
           PR+ENTI+YIKGELDELEREDFFRLKK+QGYK+REIER++              + LQ+G
Sbjct: 181 PRLENTISYIKGELDELEREDFFRLKKIQGYKRREIERKM---VIAREQQAIEKLQLQQG 237

Query: 240 ISLKSAHNLLS-VAEKDEDIIF 260
           +S +++HNLL+    KDEDIIF
Sbjct: 238 VSFETSHNLLAGTTGKDEDIIF 259