Jatropha Genome Database
- JcCA0310141.30
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0310141.30 + phase: 0 /TE/partial
(390 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse transc... 336 1e-92
IMGA|Medtr6g077300.1 Ribonuclease H chr06_pseudomolecule_IMGAG_V... 147 8e-36
IMGA|Medtr3g059210.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V... 143 2e-34
IMGA|Medtr6g077310.1 Polynucleotidyl transferase, Ribonuclease H... 134 8e-32
IMGA|Medtr4g047400.1 Ribonuclease H chr04_pseudomolecule_IMGAG_V... 97 1e-20
IMGA|Medtr4g047190.1 Ribonuclease H chr04_pseudomolecule_IMGAG_V... 97 1e-20
IMGA|Medtr3g169280.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V... 94 2e-19
IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse transc... 74 1e-13
IMGA|Medtr3g061730.1 Polynucleotidyl transferase, Ribonuclease H... 72 4e-13
IMGA|AC135504_4.1 gag-pol polyprotein, related AC135504.61 17375... 70 2e-12
IMGA|AC135504_5.1 pol-polyprotein, putative AC135504.61 87442-87... 66 4e-11
IMGA|Medtr2g120570.1 Ribonuclease H chr02_pseudomolecule_IMGAG_V... 59 3e-09
IMGA|Medtr6g008710.1 Ribonuclease H chr06_pseudomolecule_IMGAG_V... 51 8e-07
>IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr06_pseudomolecule_IMGAG_V3 15141903-15146629 E
EGN_Mt090430 20090702
Length = 1200
Score = 336 bits (862), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 164/409 (40%), Positives = 255/409 (62%), Gaps = 27/409 (6%)
Query: 1 IEKLCLALVWACTKLQHYLSSYTTYVISESNPLKFLMERPVLDCKMAKWVSVLAAYDLKF 60
+EK C AL WA +L+HYL ++TT++IS +P+K++ E+ + K+A+W +L+ Y + F
Sbjct: 445 LEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYYIVF 504
Query: 61 VQRKAVKGGALADQLAELPIEDPMP-EVEFPDEDLLSLESE---------------VWEM 104
+KA+KG LAD LA P++D P E +FPDE+++ L+S+ W +
Sbjct: 505 KTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLIDEGPDPNSKWGL 564
Query: 105 YFDGASNYHGNGVGVLFKTPCGEFVPIAVKLDFDCTNNEAEYEACIKGLEAALEMEIKVL 164
FDGA N +G G+G + +P G +P ++ F+CTNN AEYEACI G+E A++M IK L
Sbjct: 565 VFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHL 624
Query: 165 RVFGDSNLIVSQALRKWKIKEERLVPYLQRLDELAQQFEELSFHYLPRAKNQFADALATL 224
++GDS L+++Q +W+ +L+PY L F ++ H++PR +NQ ADALATL
Sbjct: 625 DIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATL 684
Query: 225 ASMVNVGGDQVIRPLTVWLQKQPTHVM-----------HLVDDKPWYWDIQNYLQNEAYP 273
+SM V + + V ++P+HV ++VD KPWY+DI+ +L + YP
Sbjct: 685 SSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENVVDYKPWYYDIKQFLLSREYP 744
Query: 274 EGSTKTDQQTLRQLASGYYLTKGVLYKRSWNGLHLRCVDEGEAQNIMDSLHNGESGPHMH 333
G++K D++TLR+LAS + L +LYKR+++ + LRCVDE EA+ +M +H+G G H
Sbjct: 745 SGASKQDKKTLRRLASRFLLNGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHAT 804
Query: 334 GIALAQKIMNLGYYWSTMNADCVRHAQKCHECQIFAKLQKQPPVNLNPI 382
G +++K++ GYYW M DC ++A+KCH+CQI+A PP LN I
Sbjct: 805 GHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVI 853
>IMGA|Medtr6g077300.1 Ribonuclease H chr06_pseudomolecule_IMGAG_V3
15275252-15275869 F EGN_Mt090430 20090702
Length = 179
Score = 147 bits (371), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 112/177 (63%), Gaps = 16/177 (9%)
Query: 31 NPLKFLMERPVLDCKMAKWVSVLAAYDLKFVQRKAVKGGALADQLAELPIEDPMP-EVEF 89
+P+K++ E+ V+ K+A+W +L+ YD+ F +KA+KG LAD LA P++D P E +F
Sbjct: 2 DPIKYIFEKAVVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDF 61
Query: 90 PDEDLLSLESE---------------VWEMYFDGASNYHGNGVGVLFKTPCGEFVPIAVK 134
PDE+++ L+S+ W + FDGA N +G G+G + +P G +P +
Sbjct: 62 PDEEIMYLKSKDCDEPSINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTAR 121
Query: 135 LDFDCTNNEAEYEACIKGLEAALEMEIKVLRVFGDSNLIVSQALRKWKIKEERLVPY 191
+ F+CTNN AEYEACI G+E A++M IK L ++GDS L+++Q +W+ +L+PY
Sbjct: 122 ILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPY 178
>IMGA|Medtr3g059210.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V3
13291307-13288982 H EGN_Mt090430 20090702
Length = 695
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 172/370 (46%), Gaps = 80/370 (21%)
Query: 1 IEKLCLALVWACTKLQHYLSSYTTYVISESNPLKFLMERPVLDCKMAKWVSVLAAYDLKF 60
IEK+ LALV + KL+ Y S+T ++ + P++ ++++P L +M
Sbjct: 138 IEKVALALVSSARKLRPYFQSHTI-IVRTNQPIRQVLQKPDLAGRM-------------- 182
Query: 61 VQRKAVKGGALADQLAELPIEDPMPEVEFPDEDLLSLESEVWEMYFDGASNYHGNGVGVL 120
+ +E+ W + DG+SN G+G GV
Sbjct: 183 ---------------------------------IECMEAAKWVLSVDGSSNLKGSGAGVT 209
Query: 121 FKTPCGEFVPIAVKLDFDCTNNEAEYEACIKGLEAALEMEIKVLRVFGDSNLIVSQALRK 180
+ P G + +++ DF +NN+AEYEA G+ AL++ +K L DS L+ Q
Sbjct: 210 LEGPYGVLIEQSLRFDFKSSNNQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGN 269
Query: 181 WKIKEERLVPYLQRLDELAQQFEELSFHYLPRAKNQFADALATLASMVNVGGDQVIRPLT 240
++ K+ +L+ YL+ + E +N AD LA LAS G ++ + T
Sbjct: 270 FQTKDPQLLMYLESVIE----------------QNGRADLLAKLASTKRQGNNRSVIQET 313
Query: 241 VWLQKQPT----HVMHLVDD-KPWYWDIQNYLQNEAYP---EGSTKTDQQTLRQLASGYY 292
+ KQP+ + L +D K W I YL+++ P E ++K ++ ++ + Y
Sbjct: 314 L---KQPSIEQKEFLFLTEDFKSWMGHIIRYLKDDQLPMEEEQASKVKKRAIKFVVIAYQ 370
Query: 293 LTKGVLYKRSWNGLHLRCVDEGEAQNIMDSLHNGESGPHMHGIALAQKIMNLGYYWSTMN 352
L+ R ++ HL+C+ +A+ ++ + G G H+ G ALA K++ GYYW TM
Sbjct: 371 -----LFIRGFSSPHLKCLAPQQAEYVIAEVDEGVCGTHIGGRALAAKVLRAGYYWPTMK 425
Query: 353 ADCVRHAQKC 362
DC ++ +KC
Sbjct: 426 EDCSKYVKKC 435
>IMGA|Medtr6g077310.1 Polynucleotidyl transferase, Ribonuclease H
fold chr06_pseudomolecule_IMGAG_V3 15275871-15277296 E
EGN_Mt090430 20090702
Length = 445
Score = 134 bits (337), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 90/129 (69%)
Query: 252 HLVDDKPWYWDIQNYLQNEAYPEGSTKTDQQTLRQLASGYYLTKGVLYKRSWNGLHLRCV 311
++VD +PWY+DI+ +L + YP G++K D++TLR+LA + L +LYKR+++ + LRCV
Sbjct: 37 NVVDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCV 96
Query: 312 DEGEAQNIMDSLHNGESGPHMHGIALAQKIMNLGYYWSTMNADCVRHAQKCHECQIFAKL 371
DE EA+ +M +H+G G H G +++K++ GYYW TM DC ++A+KCH+CQI+A
Sbjct: 97 DEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADK 156
Query: 372 QKQPPVNLN 380
PP LN
Sbjct: 157 IHVPPHALN 165
>IMGA|Medtr4g047400.1 Ribonuclease H chr04_pseudomolecule_IMGAG_V3
11037309-11036614 H EGN_Mt090430 20090702
Length = 231
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 112/228 (49%), Gaps = 18/228 (7%)
Query: 48 KWVSVLAAYDLKFVQRKAVKGGALADQLAELPIEDPMPEVEFPDEDLLSLESEVWEMYFD 107
KW +D+ + RKA+K AD AE+ FPD+ + E +W +Y D
Sbjct: 2 KWSLEFLEFDIHYESRKALKAHMFADFKAEMT---------FPDD---ANEEGIWIIYVD 49
Query: 108 GASNYHGNGVGVLFKTPCGEFVPIAVKLDFDCTNNEAEYEACIKGLEAALEMEIKVLRVF 167
G+SN G+G GV+ + +++ L F TNN AEYEA + GL A +ME K +++
Sbjct: 50 GSSNSKGSGAGVIVDNSNKIVIELSLGLSFTMTNNTAEYEAYLVGLRVAKDMEAKRVKIC 109
Query: 168 GDSNLIVSQALRKWKIKEERLVPYLQRLDELAQQFEELSFHYLPRAKNQFADALATLASM 227
DS L SQ +++++EE Y+ + ++F+ + ++ R N + L+ LAS
Sbjct: 110 TDSQLAASQVSGEFQVQEEHRQEYVLVVQAKIKEFDSVEVEHVLREINTRENILSKLAST 169
Query: 228 VNVGGD-----QVIRPLTVWLQKQPTHVMHLV-DDKPWYWDIQNYLQN 269
G+ +V+ +V QK H ++++ + W + Y+ N
Sbjct: 170 RTTNGNITVIQEVLTEPSVQRQKALLHEINVIFKVQDWRGHLIRYISN 217
>IMGA|Medtr4g047190.1 Ribonuclease H chr04_pseudomolecule_IMGAG_V3
10902288-10901593 H EGN_Mt090430 20090702
Length = 231
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 112/228 (49%), Gaps = 18/228 (7%)
Query: 48 KWVSVLAAYDLKFVQRKAVKGGALADQLAELPIEDPMPEVEFPDEDLLSLESEVWEMYFD 107
KW +D+ + RKA+K AD AE+ FPD+ + E +W +Y D
Sbjct: 2 KWSLEFLEFDIHYESRKALKAHMFADFKAEMT---------FPDD---ANEEGIWIIYVD 49
Query: 108 GASNYHGNGVGVLFKTPCGEFVPIAVKLDFDCTNNEAEYEACIKGLEAALEMEIKVLRVF 167
G+SN G+G GV+ + +++ L F TNN AEYEA + GL A +ME K +++
Sbjct: 50 GSSNSKGSGAGVIVDNSNKIVIELSLGLSFTMTNNTAEYEAYLVGLRVAKDMEAKRVKIC 109
Query: 168 GDSNLIVSQALRKWKIKEERLVPYLQRLDELAQQFEELSFHYLPRAKNQFADALATLASM 227
DS L SQ +++++EE Y+ + ++F+ + ++ R N + L+ LAS
Sbjct: 110 TDSQLAASQVSGEFQVQEEHRQEYVLVVQAKIKEFDSVEVEHVLREINTRENILSKLAST 169
Query: 228 VNVGGD-----QVIRPLTVWLQKQPTHVMHLV-DDKPWYWDIQNYLQN 269
G+ +V+ +V QK H ++++ + W + Y+ N
Sbjct: 170 RTTNGNITVIQEVLTEPSVQRQKALLHEINVIFKVQDWRGHLIRYISN 217
>IMGA|Medtr3g169280.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V3
44103723-44102826 H EGN_Mt090430 20090702
Length = 258
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 122/295 (41%), Gaps = 76/295 (25%)
Query: 89 FPDEDLLSLESEVWEMYFDGASNYHGNGVGVLFKTPCGEFVPIAVKLDFDCTNNEAEYEA 148
FP +D E W ++ +SN G+G G++ + + +A
Sbjct: 3 FPTDD----NKEEWTVFVYESSNSKGSGAGIIVE----------------------DNKA 36
Query: 149 CIKGLEAALEMEIKVLRVFGDSNLIVSQALRKWKIKEERLVPYLQRLDELAQQFEELSFH 208
+ GL A +M K +++F DS L+ SQ ++ +KEE L Y+Q + E ++ E +
Sbjct: 37 FLAGLRTAQDMGEKKVKIFTDSQLVASQVTGEFHVKEEHLQKYVQFVLEKMKEIEAVEVT 96
Query: 209 YLPRAKNQFADALATLASMVNVGGDQVIRPLTVWLQKQPTHVMHLVDDKPWYWDIQNYLQ 268
++PR +N AD L+ LAS G++ + IQ L
Sbjct: 97 HVPREQNTRADILSKLASTRTANGNKTM--------------------------IQEVL- 129
Query: 269 NEAYPEGSTKTDQQTLRQLASGYYLTKGVLYKRSWNGLHLRCVDEGEAQNIMDSLHNGES 328
NE + K + ++L +H R E Q ++ +H+G
Sbjct: 130 NETSIQEKAKDEMKSLL--------------------VHFRL---NETQEVLADVHDGIC 166
Query: 329 GPHMHGIALAQKIMNLGYYWSTMNADCVRHAQKCHECQIFAKLQKQPPVNLNPIL 383
G H+ ALA++I+ GYYW TM D + C +CQ + PP +L ++
Sbjct: 167 GQHLGAKALAKQILRAGYYWPTMLKDTQDYMNLCDKCQRHGDMHLAPPADLTLVV 221
>IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr03_pseudomolecule_IMGAG_V3 14037305-14035821 H
EGN_Mt090430 20090702
Length = 479
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 32/177 (18%)
Query: 1 IEKLCLALVWACTKLQHYLSSYTTYVISESNPLKFLMERPVLDCKMAKWVSVLAAYDLKF 60
IE L LA+V KL+ Y S+ V+ + P++ ++ +P L +M
Sbjct: 333 IECLALAVVTTARKLRPYFQSHKI-VVKSNYPIRQVLGKPDLAGRMVAG----------- 380
Query: 61 VQRKAVKGGALADQLAEL--PIEDPMPEVEFPDEDLLSLESEVWEMYFDGASNYHGNGVG 118
+K LAD + EL PI+D +P V W + DG+SN +G G
Sbjct: 381 ----NIKSQVLADFVVELTSPIQDEVPYV--------------WLLSVDGSSNLKDSGAG 422
Query: 119 VLFKTPCGEFVPIAVKLDFDCTNNEAEYEACIKGLEAALEMEIKVLRVFGDSNLIVS 175
V+ + P + +++ +F +NN+ EYEA I G+ A EM + LR DS L+ S
Sbjct: 423 VILEGPNDLLIEQSLRFEFKASNNQVEYEALIAGMVLAQEMGAENLRAKSDSQLVTS 479
>IMGA|Medtr3g061730.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 14035625-14034550 H
EGN_Mt090430 20090702
Length = 270
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query: 256 DKPWYWDIQNYLQNEAYPEGSTKTDQQTLRQLASGYYLTKGVLYKRSWNGLHLRCVDEGE 315
++ W + YL P + ++Q +R+ AS + LYKR LRC+ E E
Sbjct: 17 EESWMATLLKYLTGSFTPVSAE--EEQVVRKRASKFVNVSRKLYKRGRTNPLLRCLGEDE 74
Query: 316 AQNIMDSLHNGESGPHMHGIALAQKIMNLGYYWSTMNADCVRHAQKCHECQIFA 369
++ +H G G H+ G ALA K++ GYYW TM D +KC +CQ F+
Sbjct: 75 THLVLLEVHEGVCGSHIRGRALAAKLLRSGYYWPTMLHDSSDFVRKCDKCQKFS 128
>IMGA|AC135504_4.1 gag-pol polyprotein, related AC135504.61
17375-18058 H EGN_Mt090430 20090702
Length = 227
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 14/126 (11%)
Query: 1 IEKLCLALVWACTKLQHYLSSYTTYVISESNPLKFLMERPVLDCKMAKWVSVLAAYDLKF 60
IEK+ LAL+ A +L+ Y ++T ++ P++ ++ RP + +M KW L+ +D+ +
Sbjct: 104 IEKVALALLTASQRLRQYFFAHTV-IVKIDQPIRQILGRPNVAGRMMKWSLELSEFDIHY 162
Query: 61 VQRKAVKGGALADQLAELPIEDPMPEVEFPDEDLLSLESEVWEMYFDGASNYHGNGVGVL 120
RKA+K AD L E+ FP E +E W ++ DG+SN G+G G++
Sbjct: 163 ESRKALKAQVFADFLTEMT---------FPTE----YNTEEWTVFVDGSSNSKGSGAGII 209
Query: 121 FKTPCG 126
+ G
Sbjct: 210 VEDNKG 215
>IMGA|AC135504_5.1 pol-polyprotein, putative AC135504.61 87442-87913
H EGN_Mt090430 20090702
Length = 142
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%)
Query: 295 KGVLYKRSWNGLHLRCVDEGEAQNIMDSLHNGESGPHMHGIALAQKIMNLGYYWSTMNAD 354
+G LYKR + ++C+ E Q ++ +H+G G H+ +LA+K++ GYYW TM D
Sbjct: 2 EGTLYKRGFITPLIKCLGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLKD 61
Query: 355 CVRHAQKCHECQIFAKLQKQPPVNLNPIL 383
+ C +CQ + PPV L ++
Sbjct: 62 AEDYVNLCDKCQRHGDMHLAPPVELTSLV 90
>IMGA|Medtr2g120570.1 Ribonuclease H chr02_pseudomolecule_IMGAG_V3
28388705-28395880 E EGN_Mt090430 20090702
Length = 412
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Query: 106 FDGAS--NYHGNGVGVLFKTPCGEFVPIAVKLDFDCTNNEAEYEACIKGLEAALEMEIKV 163
FDGAS N G G + ++ G + + TNN AEY A I G+ AL+
Sbjct: 245 FDGASKGNPGKAGAGAILRSKDGNLIYRVREGVGIATNNVAEYRAMILGMRHALKKGFTS 304
Query: 164 LRVFGDSNLIVSQALRKWKIKEERLVPYLQRLDELAQQFEELSFHYLPRAKNQFADALAT 223
+ + GDS L+ Q WK+K E L + EL +F ++ R N ADA A
Sbjct: 305 ICIQGDSKLVCMQIDGLWKVKNENLSTLYKVAKELKDKFVSFKISHVLRDLNSEADAQAN 364
Query: 224 LASMVNVGGDQV 235
LA VN+ QV
Sbjct: 365 LA--VNLADGQV 374
>IMGA|Medtr6g008710.1 Ribonuclease H chr06_pseudomolecule_IMGAG_V3
1223230-1226786 H EGN_Mt090430 20090702
Length = 210
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 138 DCTNNEAEYEACIKGLEAALEMEIKVLRVFGDSNLIVSQALRKWKIKEERLVPYLQRLDE 197
+ T EAEY A I GL+ A+ K + V G+S + +Q W+ + L +
Sbjct: 108 NLTQKEAEYRALILGLKQAIMKGFKNITVKGESKFVTNQFGEPWQTADGNLRKLCLEAMK 167
Query: 198 LAQQFEELSFHYLPRAKNQFADALATLASMVNVG 231
L F+ S HY+P N+ A +A A +NVG
Sbjct: 168 LRNNFDSFSIHYIPSEHNKGASDIANYAIHLNVG 201