Jatropha Genome Database

JcCA0310141.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0310141.20 - phase: 2 /pseudo
         (329 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC225519_20.1 Transthyretin AC225519.5 87954-92625 E EGN_Mt...   273   7e-74
IMGA|AC225519_20.2 Transthyretin AC225519.5 87954-92625 E EGN_Mt...   118   5e-27
IMGA|AC202568_17.2 Transthyretin AC202568.9 84242-84653 E EGN_Mt...   110   8e-25
IMGA|AC202568_16.1 TTL ; steroid binding, related AC202568.9 800...   109   2e-24
IMGA|AC202568_17.1 TTL ; steroid binding {Arab, putative AC20256...    62   4e-10

>IMGA|AC225519_20.1 Transthyretin AC225519.5 87954-92625 E
           EGN_Mt090430 20090702
          Length = 307

 Score =  273 bits (699), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 141/241 (58%), Positives = 165/241 (68%), Gaps = 31/241 (12%)

Query: 90  LQELSHWNAQYKEKFGFIFLICASGRSTTEILAELKKRYQNRPIVEFEIAAQEQMKITEL 149
           LQEL+ WNA+Y +KFGF+FL+CASGRST  +LAELK+RY N+PIVEFEIAAQEQMKITEL
Sbjct: 97  LQELAEWNARYMQKFGFVFLVCASGRSTESLLAELKRRYANKPIVEFEIAAQEQMKITEL 156

Query: 150 RLGKLFSTKINAASTGNQHSTSFGAKAEEDRVGIIGGHLTAAL-NFSSGKASQXXXXXXX 208
           RLGKLF+ +                +AEE RV IIGGH+TAA  N  +GK+ Q       
Sbjct: 157 RLGKLFTNQ----------------RAEEVRVSIIGGHVTAAASNTLTGKSIQNTSRTRP 200

Query: 209 XXXXHVLDVSRGCPAGGVEVCLEMWNGTQPRPLFGEIGVDSWVVQGASTTDADGRCGQLM 268
               HVLDVSRG PA G+EV LE+W G+Q  P FG      WVV G+STTD+DGR GQLM
Sbjct: 201 AITTHVLDVSRGYPAPGIEVLLEVWRGSQAGPTFGITDGGGWVVLGSSTTDSDGRSGQLM 260

Query: 269 SMVDVVNPGIYRISFNTGKYCPSGFFPYVSIVFEIREAQNREHFHVPLLFSPFSFTTYRG 328
            +VD               Y P+GFFPY +IVFEI E+Q REHFHVPLL SPFSF+TYRG
Sbjct: 261 DIVD--------------DYNPTGFFPYATIVFEILESQKREHFHVPLLLSPFSFSTYRG 306

Query: 329 S 329
           S
Sbjct: 307 S 307


>IMGA|AC225519_20.2 Transthyretin AC225519.5 87954-92625 E
           EGN_Mt090430 20090702
          Length = 164

 Score =  118 bits (295), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 53/67 (79%), Positives = 62/67 (92%)

Query: 90  LQELSHWNAQYKEKFGFIFLICASGRSTTEILAELKKRYQNRPIVEFEIAAQEQMKITEL 149
           LQEL+ WNA+Y +KFGF+FL+CASGRST  +LAELK+RY N+PIVEFEIAAQEQMKITEL
Sbjct: 97  LQELAEWNARYMQKFGFVFLVCASGRSTESLLAELKRRYANKPIVEFEIAAQEQMKITEL 156

Query: 150 RLGKLFS 156
           RLGKLF+
Sbjct: 157 RLGKLFT 163


>IMGA|AC202568_17.2 Transthyretin AC202568.9 84242-84653 E
           EGN_Mt090430 20090702
          Length = 62

 Score =  110 bits (276), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 47/62 (75%), Positives = 55/62 (88%)

Query: 268 MSMVDVVNPGIYRISFNTGKYCPSGFFPYVSIVFEIREAQNREHFHVPLLFSPFSFTTYR 327
           M +VD V+PGIYR++FNTGKY P+GFFPY +IVFEI E+Q REHFHVPLL SPFSF+TYR
Sbjct: 1   MDIVDDVDPGIYRLTFNTGKYNPTGFFPYATIVFEILESQKREHFHVPLLLSPFSFSTYR 60

Query: 328 GS 329
           GS
Sbjct: 61  GS 62


>IMGA|AC202568_16.1 TTL ; steroid binding, related AC202568.9
           80024-84238 E EGN_Mt090430 20090702
          Length = 199

 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/114 (54%), Positives = 79/114 (69%), Gaps = 16/114 (14%)

Query: 90  LQELSHWNAQYKEKFGFIFLICASGRSTTEILAELKKRYQNRPIVEFEIAAQEQMKITEL 149
           LQEL+ WNA+Y +KFGF+FL+CASGRST  +LAELK              AQEQMKITEL
Sbjct: 97  LQELAEWNARYMQKFGFVFLVCASGRSTESLLAELK--------------AQEQMKITEL 142

Query: 150 RLGKLFSTKINAASTGNQHSTSFG-AKAEEDRVGIIGGHLTAAL-NFSSGKASQ 201
           RLGKLF++K N +ST + +S +   ++  E RV IIGGH+TAA  N  +GK+ Q
Sbjct: 143 RLGKLFTSKKNISSTTDTNSIAVAQSQRAEVRVSIIGGHVTAAASNTLTGKSIQ 196


>IMGA|AC202568_17.1 TTL ; steroid binding {Arab, putative AC202568.9
           80024-84653 E EGN_Mt090430 20090702
          Length = 141

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 33/37 (89%)

Query: 90  LQELSHWNAQYKEKFGFIFLICASGRSTTEILAELKK 126
           LQEL+ WNA+Y +KFGF+FL+CASGRST  +LAELK+
Sbjct: 97  LQELAEWNARYMQKFGFVFLVCASGRSTESLLAELKE 133