Jatropha Genome Database

JcCA0309961.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309961.30 - phase: 2 /pseudo/partial
         (93 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g122670.1 ELK; KNOX1; KNOX2; Homeodomain-related chr0...    59   4e-10
IMGA|Medtr5g011210.1 ELK; KNOX1; KNOX2; Homeodomain-related chr0...    59   6e-10
IMGA|Medtr3g137900.1 ELK; KNOX1; KNOX2; Homeodomain-related chr0...    52   1e-07
IMGA|Medtr3g137900.2 ELK; KNOX1; KNOX2; Homeodomain-related chr0...    51   1e-07

>IMGA|Medtr8g122670.1 ELK; KNOX1; KNOX2; Homeodomain-related
           chr08_pseudomolecule_IMGAG_V3 28787058-28781546 E
           EGN_Mt090430 20090702
          Length = 332

 Score = 59.3 bits (142), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 32/36 (88%)

Query: 58  SVDGHDLMGFGPLIPTESERSLMERVRQELKIELKQ 93
           S+DG D +GFGPL+PTE+ERSLMERVR ELK ELKQ
Sbjct: 206 SLDGVDTLGFGPLVPTETERSLMERVRLELKHELKQ 241


>IMGA|Medtr5g011210.1 ELK; KNOX1; KNOX2; Homeodomain-related
           chr05_pseudomolecule_IMGAG_V3 3000765-2996172 E
           EGN_Mt090430 20090702
          Length = 305

 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/49 (73%), Positives = 39/49 (79%), Gaps = 3/49 (6%)

Query: 48  LQMDFSLDQPS---VDGHDLMGFGPLIPTESERSLMERVRQELKIELKQ 93
           LQMD+ LD  S      HD+MG GPL+PTESERSLMERVRQELKIELKQ
Sbjct: 154 LQMDYGLDNQSSGGGGDHDMMGLGPLLPTESERSLMERVRQELKIELKQ 202


>IMGA|Medtr3g137900.1 ELK; KNOX1; KNOX2; Homeodomain-related
           chr03_pseudomolecule_IMGAG_V3 35070779-35066452 E
           EGN_Mt090430 20090702
          Length = 373

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 33/45 (73%), Gaps = 2/45 (4%)

Query: 51  DFSLDQPSVDGHD--LMGFGPLIPTESERSLMERVRQELKIELKQ 93
           D +L    +DG D  + GFGPL+ TE+ERSLMERVR ELK ELKQ
Sbjct: 237 DVNLFDGGLDGSDNSMGGFGPLVLTENERSLMERVRHELKHELKQ 281


>IMGA|Medtr3g137900.2 ELK; KNOX1; KNOX2; Homeodomain-related
           chr03_pseudomolecule_IMGAG_V3 35070779-35066452 E
           EGN_Mt090430 20090702
          Length = 371

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 33/45 (73%), Gaps = 2/45 (4%)

Query: 51  DFSLDQPSVDGHD--LMGFGPLIPTESERSLMERVRQELKIELKQ 93
           D +L    +DG D  + GFGPL+ TE+ERSLMERVR ELK ELKQ
Sbjct: 237 DVNLFDGGLDGSDNSMGGFGPLVLTENERSLMERVRHELKHELKQ 281