Jatropha Genome Database

JcCA0309871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309871.10 + phase: 0 
         (70 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g109690.1 hypothetical protein chr08_pseudomolecule_I...    52   9e-08

>IMGA|Medtr8g109690.1 hypothetical protein
          chr08_pseudomolecule_IMGAG_V3 24671084-24671750 F
          EGN_Mt090430 20090702
          Length = 67

 Score = 51.6 bits (122), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/38 (76%), Positives = 31/38 (81%), Gaps = 1/38 (2%)

Query: 33 CNKGKTCKFKRSSSNLEDDGASSAIFLLACIACTTPSY 70
          CNKGK  KFKRSSSN+E+DG SSAI  LACIAC  PSY
Sbjct: 30 CNKGKAGKFKRSSSNVEEDGLSSAILFLACIAC-APSY 66