Jatropha Genome Database

JcCA0309861.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309861.20 - phase: 0 
         (519 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g125380.1 Dehydroquinase class I; Shikimate/quinate 5...   436   e-122
IMGA|Medtr7g140010.1 Dehydroquinase class I chr07_pseudomolecule...   131   9e-31
IMGA|Medtr7g139990.1 Bifunctional 3-dehydroquinate dehydratase/s...   100   1e-21
IMGA|Medtr7g140000.1 hypothetical protein chr07_pseudomolecule_I...    66   4e-11

>IMGA|Medtr4g125380.1 Dehydroquinase class I; Shikimate/quinate
           5-dehydrogenase; chr04_pseudomolecule_IMGAG_V3
           29552562-29559339 E EGN_Mt090430 20090702
          Length = 503

 Score =  436 bits (1122), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/498 (44%), Positives = 313/498 (62%), Gaps = 23/498 (4%)

Query: 9   SSAMVCAPLMAQSVEQMVRDMYSAKSQGADVVEVRLDYIKNFQPGQDLETILRKK-PLPV 67
           ++ ++C P+M +++++M+ D+  AK  GAD+VE+RLD +K F P QDL T +++   LP 
Sbjct: 2   NAMLICVPIMGETIQKMIADIQKAKLNGADLVEIRLDSLKTFNPSQDLNTFMQQHHSLPF 61

Query: 68  IIVYRSKCEGGLFEGDEHTRLEVLRLAHELGADYIDLELKVASDMIGELKKTHQTDSKII 127
           +  YR K EGG+++GDE+ RL+ L+LA EL ADYID+ELKVA      ++      +K+I
Sbjct: 62  LFTYRPKWEGGMYDGDENQRLDALQLAMELEADYIDVELKVAHQFYDSIRGKTYNKTKVI 121

Query: 128 VSCYLTGATPPKENLSHLVGSMQAAGADIIKLVSNANNITELQRIFYLLLHSQVPLIAYS 187
           VS +    TP  E+L +LV  +QA GADI+K+ + A  IT++ R+F +++HSQVP I   
Sbjct: 122 VSSHNYQQTPSVEDLGNLVARIQATGADIVKIATTAVEITDVARMFQIMVHSQVPFIGLV 181

Query: 188 VGERGLISQILSPKFGGSLVYGSIEGNLI--PGLPTLDSLREAYKVERINSDTKVFGLIS 245
           +G+RGLIS+IL  KFGG L +G++E  ++  PG PTL  L   Y   +I  +TKVFG++ 
Sbjct: 182 MGDRGLISRILCAKFGGYLTFGTLESGVVSAPGQPTLKDLLHLYNFRQIGPNTKVFGIVG 241

Query: 246 KPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKEFFSVYSSPDYAGFSVGFPYKEAVVE 305
           KPV H                  I+V + VDDL  F   YSS D+ GFSV  P+KEA ++
Sbjct: 242 KPVSH------------------IFVFLLVDDLANFLRTYSSTDFVGFSVTIPHKEAALK 283

Query: 306 FCDEVHPLAKSIGAVNTIVRRPSDGKLIGYNTDCEASITAIEDALKEQGYINGRTSFSSS 365
            CDEV P+AKSIG VN +VRRP+DGKLIGYNTD   +I+AIED L+  G  N   +  S 
Sbjct: 284 CCDEVDPVAKSIGVVNCVVRRPTDGKLIGYNTDYVGAISAIEDGLR--GKHNDSGTAVSP 341

Query: 366 LAGRQXXXXXXXXXXXXXXXXXKSRGARIIIFDIDFERTKSLAHAVSGEAQPFKNLVHFR 425
           L G+                  K +GARI+I +  ++R + LA  + G+A    +L ++ 
Sbjct: 342 LVGKLFVVIGAGGAGKALAYGAKEKGARIVIANRTYDRARELADVIGGDALTLNDLDNYH 401

Query: 426 PETDAILANATPLGMHPNTERIPVAEETLGIYQLVFDAVYTPRKTRLLKEAEAAGAIIVS 485
           PE   ILAN T +GM P  +  P+++  L  Y LVFDAVYTP+ TRLLKEAE +GA IV+
Sbjct: 402 PEDGMILANTTSIGMQPKVDETPISKHALKFYSLVFDAVYTPKMTRLLKEAEESGATIVT 461

Query: 486 GVEMFLRQAIGQFNLFTG 503
           G+EMF+ QA  Q+  +TG
Sbjct: 462 GLEMFIGQAYRQYEHYTG 479


>IMGA|Medtr7g140010.1 Dehydroquinase class I
           chr07_pseudomolecule_IMGAG_V3 33621441-33619831 H
           EGN_Mt090430 20090702
          Length = 142

 Score =  131 bits (329), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 69/131 (52%), Positives = 83/131 (63%), Gaps = 21/131 (16%)

Query: 115 ELKKTHQTDSKIIVSCYLTGATPPKENLSHLVGSMQAAGADIIKLVSNANNITELQRIFY 174
           ++K+ H    KII SC++ G TPP E L  LV  MQA G DIIKLV              
Sbjct: 13  KIKRNHNIHGKIIASCFVDGITPPTEELLQLVALMQATGTDIIKLV-------------- 58

Query: 175 LLLHSQVPLIAYSVGERGLISQILSPKFGGSLVYGSIEGNLIPGLPTLDSLREAYKVERI 234
                  PLIAYS+GE GLISQ L PKFGG  V GS+  N IPGLP+L SL+EAYK+E +
Sbjct: 59  -------PLIAYSIGESGLISQFLCPKFGGFFVCGSLARNPIPGLPSLHSLQEAYKLEHV 111

Query: 235 NSDTKVFGLIS 245
           N++T+VFGLIS
Sbjct: 112 NANTEVFGLIS 122


>IMGA|Medtr7g139990.1 Bifunctional 3-dehydroquinate
           dehydratase/shikimate dehydrogenase,chloroplast
           precursor, related chr07_pseudomolecule_IMGAG_V3
           33617979-33617312 H EGN_Mt090430 20090702
          Length = 99

 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/70 (65%), Positives = 59/70 (84%)

Query: 388 KSRGARIIIFDIDFERTKSLAHAVSGEAQPFKNLVHFRPETDAILANATPLGMHPNTERI 447
           K+RGARI+IFDIDF++++SLA AV GE Q +KNLV+F+P   AILANATP+GMHP+T+RI
Sbjct: 30  KTRGARIVIFDIDFDKSRSLACAVFGEVQSYKNLVNFQPVKGAILANATPIGMHPDTDRI 89

Query: 448 PVAEETLGIY 457
           PVAE    I+
Sbjct: 90  PVAEVLQSIF 99


>IMGA|Medtr7g140000.1 hypothetical protein
           chr07_pseudomolecule_IMGAG_V3 33618935-33618293 H
           EGN_Mt090430 20090702
          Length = 63

 Score = 66.2 bits (160), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/39 (76%), Positives = 31/39 (79%)

Query: 319 AVNTIVRRPSDGKLIGYNTDCEASITAIEDALKEQGYIN 357
           AVNTI R P DGKL+GYNTDCEASITAIEDAL    Y N
Sbjct: 5   AVNTITREPRDGKLVGYNTDCEASITAIEDALIGNSYYN 43