Jatropha Genome Database

JcCA0309861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309861.10 + phase: 0 
         (214 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g024280.1 Cyclin-like F-box; F-box protein interactio...    48   5e-06

>IMGA|Medtr4g024280.1 Cyclin-like F-box; F-box protein interaction
           domain chr04_pseudomolecule_IMGAG_V3 5522803-5521643 E
           EGN_Mt090430 20090702
          Length = 386

 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 5/128 (3%)

Query: 23  RKEGKFQHLPDSIIVEILSRLPSEQLSNCQLVCRKFRDLTSTPYFREIH----SVKRASP 78
           +K+    +LP  +I++IL RLP + L + + VC+ +  L S P+F   H    +      
Sbjct: 8   KKQKTLPYLPHELIIQILMRLPVKSLIHFKCVCKLWFSLISDPHFANSHFQLTTTTHTPR 67

Query: 79  IVLVQYFNPGIHDKDMQVYLLDEKTKDENQKLNCTGRFFMYCLILCSCNGLILFDSRCKL 138
           I+ +   +  I     + +L D+ T   N   +    +F    I  SC G IL      +
Sbjct: 68  IMCISSLSHEIRSIGFEAFLNDDDTASVNLNFSLPESYFP-AEIRGSCRGFILLYRDPNI 126

Query: 139 CINNPLTA 146
            I NP T 
Sbjct: 127 YIWNPSTG 134