Jatropha Genome Database

JcCA0309351.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309351.30 + phase: 0 /partial/short
         (43 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g107670.1 S25 ribosomal protein chr02_pseudomolecule_...    71   1e-13
IMGA|Medtr4g096150.1 S25 ribosomal protein chr04_pseudomolecule_...    70   2e-13

>IMGA|Medtr2g107670.1 S25 ribosomal protein
           chr02_pseudomolecule_IMGAG_V3 25380400-25379636 E
           EGN_Mt090430 20090702
          Length = 107

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/38 (86%), Positives = 37/38 (97%)

Query: 6   RINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 43
           RINGSLARRAI+DLMARG IR++SAH+SQQIYTRATNT
Sbjct: 70  RINGSLARRAIRDLMARGLIRLVSAHSSQQIYTRATNT 107


>IMGA|Medtr4g096150.1 S25 ribosomal protein
           chr04_pseudomolecule_IMGAG_V3 20152498-20149699 F
           EGN_Mt090430 20090702
          Length = 107

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/38 (84%), Positives = 37/38 (97%)

Query: 6   RINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 43
           RINGSLARRAI+DLMA+G IR++SAH+SQQIYTRATNT
Sbjct: 70  RINGSLARRAIRDLMAKGLIRLVSAHSSQQIYTRATNT 107