Jatropha Genome Database

JcCA0309221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309221.20 + phase: 0 /partial
         (178 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g099220.1 Tyrosine protein kinase chr01_pseudomolecul...   105   1e-23

>IMGA|Medtr1g099220.1 Tyrosine protein kinase
           chr01_pseudomolecule_IMGAG_V3 20213766-20210623 E
           EGN_Mt090430 20090702
          Length = 409

 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 93/185 (50%), Gaps = 7/185 (3%)

Query: 1   METSTTAASAAPGRPLGDHTLKHH--HFHSPQQHQNXXXXXXXXXXXXXXXXXXXXXXXX 58
           + +STT  +  P     +HT  HH  H HS + + N                        
Sbjct: 3   VNSSTTVPAGPPTISTKNHTFIHHYHHLHSEKDYHNHVGHFPFKTIIIIITMVALIMLLF 62

Query: 59  XXXXXXXXXXXKSAKNTSSSVKDNCS---INNASCRFIAHSTITFTSSPDVKGGCLYGSN 115
                      + + + +   KD+C    +++ S R IA + ++F SSPDVKGGCLYG N
Sbjct: 63  TIFLVVCLIRRQKSSSKNGVCKDDCESRVLHDTSRRHIAPTILSFDSSPDVKGGCLYGGN 122

Query: 116 LSQKPPR-KYKGVQVFTYKELEVATERFSEAXXX-XXXXXXXXXXXXLADGTVAAVKMLR 173
           LS+ PP  K++GVQVFTY+ELEVAT  F+EA                L+DGT+AA+K+L+
Sbjct: 123 LSRTPPTPKFRGVQVFTYRELEVATNGFNEANEIGNGGINGLMYKGVLSDGTLAAIKLLQ 182

Query: 174 REGKQ 178
            EGKQ
Sbjct: 183 SEGKQ 187