Jatropha Genome Database

JcCA0309141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309141.10 - phase: 0 /pseudo/partial
         (233 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g088400.1 Isocitrate/isopropylmalate dehydrogenase ch...   158   2e-39
IMGA|Medtr8g088400.2 Isocitrate/isopropylmalate dehydrogenase ch...   158   3e-39
IMGA|Medtr5g023610.1 Isocitrate dehydrogenase NAD-dependent, mit...   157   5e-39
IMGA|Medtr1g076710.1 Isocitrate/isopropylmalate dehydrogenase ch...   101   3e-22
IMGA|Medtr3g148020.1 Isocitrate dehydrogenase NAD-dependent, mit...   100   6e-22
IMGA|Medtr2g127240.1 Isocitrate/isopropylmalate dehydrogenase ch...    50   8e-07

>IMGA|Medtr8g088400.1 Isocitrate/isopropylmalate dehydrogenase
           chr08_pseudomolecule_IMGAG_V3 18715358-18720848 F
           EGN_Mt090430 20090702
          Length = 371

 Score =  158 bits (399), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 73/88 (82%), Positives = 76/88 (86%)

Query: 117 LNNRKKVTAVHKANIMKLADGLFLESCREVSSKYPGIKYNEIIVDNCCMQLVSKPEQFDV 176
           LNNRK+VTAVHKANIMKLADGLFLESCREV++KYPGIKYNEIIVDNCCMQLVSKPEQFDV
Sbjct: 194 LNNRKQVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDV 253

Query: 177 MVTPNLYGNLVXXXXXXXXXXXXVMPGG 204
           MVTPNLYGNLV            VMPGG
Sbjct: 254 MVTPNLYGNLVANTAAGIAGGTGVMPGG 281


>IMGA|Medtr8g088400.2 Isocitrate/isopropylmalate dehydrogenase
           chr08_pseudomolecule_IMGAG_V3 18715358-18720848 F
           EGN_Mt090430 20090702
          Length = 367

 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 73/88 (82%), Positives = 76/88 (86%)

Query: 117 LNNRKKVTAVHKANIMKLADGLFLESCREVSSKYPGIKYNEIIVDNCCMQLVSKPEQFDV 176
           LNNRK+VTAVHKANIMKLADGLFLESCREV++KYPGIKYNEIIVDNCCMQLVSKPEQFDV
Sbjct: 190 LNNRKQVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDV 249

Query: 177 MVTPNLYGNLVXXXXXXXXXXXXVMPGG 204
           MVTPNLYGNLV            VMPGG
Sbjct: 250 MVTPNLYGNLVANTAAGIAGGTGVMPGG 277


>IMGA|Medtr5g023610.1 Isocitrate dehydrogenase NAD-dependent,
           mitochondrial chr05_pseudomolecule_IMGAG_V3
           9296836-9292742 E EGN_Mt090430 20090702
          Length = 376

 Score =  157 bits (396), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 73/87 (83%), Positives = 75/87 (86%)

Query: 117 LNNRKKVTAVHKANIMKLADGLFLESCREVSSKYPGIKYNEIIVDNCCMQLVSKPEQFDV 176
           LNNRKKVTAVHKANIMKLADGLFLESCREV++KYPGIKYNEIIVDNCCMQLVSKPEQFDV
Sbjct: 190 LNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDV 249

Query: 177 MVTPNLYGNLVXXXXXXXXXXXXVMPG 203
           MVTPNLYGNLV            VMPG
Sbjct: 250 MVTPNLYGNLVANTAAGIAGGTGVMPG 276


>IMGA|Medtr1g076710.1 Isocitrate/isopropylmalate dehydrogenase
           chr01_pseudomolecule_IMGAG_V3 15387464-15381789 E
           EGN_Mt090430 20090702
          Length = 358

 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 56/70 (80%)

Query: 118 NNRKKVTAVHKANIMKLADGLFLESCREVSSKYPGIKYNEIIVDNCCMQLVSKPEQFDVM 177
           + RK+V+A+HKANIM+  DGLFL+ CREV+ KYP I Y E+++DNCCM LV  P  FDV+
Sbjct: 186 HGRKRVSAIHKANIMQKTDGLFLKCCREVAEKYPEIVYEEVVIDNCCMMLVKNPGLFDVL 245

Query: 178 VTPNLYGNLV 187
           V PNLYG+++
Sbjct: 246 VMPNLYGDII 255


>IMGA|Medtr3g148020.1 Isocitrate dehydrogenase NAD-dependent,
           mitochondrial chr03_pseudomolecule_IMGAG_V3
           38483952-38479533 E EGN_Mt090430 20090702
          Length = 353

 Score =  100 bits (249), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 57/70 (81%)

Query: 118 NNRKKVTAVHKANIMKLADGLFLESCREVSSKYPGIKYNEIIVDNCCMQLVSKPEQFDVM 177
           + R++V+A+HKANIM+  DGLFL+ CREV++KYP I Y E+++DNCCM LV  P  FDV+
Sbjct: 181 HGRERVSAIHKANIMQKTDGLFLKCCREVANKYPEIVYEEVVIDNCCMMLVKNPALFDVL 240

Query: 178 VTPNLYGNLV 187
           V PNLYG+++
Sbjct: 241 VMPNLYGDII 250


>IMGA|Medtr2g127240.1 Isocitrate/isopropylmalate dehydrogenase
           chr02_pseudomolecule_IMGAG_V3 31006680-31012460 E
           EGN_Mt090430 20090702
          Length = 405

 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 122 KVTAVHKANIMKLADGLFLESCREVSSKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPN 181
           K+ +V KAN+++ A   + +    ++ +YP ++ + + VDN  MQLV  P+QFD +VT N
Sbjct: 224 KLCSVDKANVLE-ASMFWRKRVVALAQEYPDVELSHMYVDNAAMQLVRYPKQFDTIVTNN 282

Query: 182 LYGNLV 187
           ++G+++
Sbjct: 283 IFGDIL 288