Jatropha Genome Database

JcCA0309091.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0309091.20 + phase: 1 /TE
         (146 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H...    68   1e-12
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy...    67   3e-12
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H...    66   7e-12
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H...    64   3e-11
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H...    64   3e-11
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po...    63   5e-11
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole...    60   3e-10
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f...    60   3e-10

>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
            chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
            EGN_Mt090430 20090702
          Length = 1275

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 57/125 (45%), Gaps = 2/125 (1%)

Query: 1    LLKDAGLDNLNPVQTPLVQGQKLISEMGCPMXXXXXXXXXXXXXXXXSMTGPNISFGVQQ 60
            LL D+G     P+ TP     KL  +   P                 + T P+I+F  QQ
Sbjct: 990  LLHDSGHIGSKPISTPSDPSTKLHHDTSTPYDDIPAYRRLVGRLLYLNNTRPDITFITQQ 1049

Query: 61   VSQFIQNPYEGHLQAALHLLRYLRGTTNLGLFFPHSSPHTITAYYNADXATC--TVTPLV 118
            +SQF+ NP   H  AAL  LRYL+     GLFFP +S  T+  + +AD A C  T   + 
Sbjct: 1050 LSQFLSNPTIAHHNAALRTLRYLKSCPGKGLFFPRNSSLTLQGFSDADWAGCLDTRKSVT 1109

Query: 119  SQCVL 123
             QC  
Sbjct: 1110 GQCFF 1114


>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
            transferase, Ribonuclease H fold
            chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
            EGN_Mt090430 20090702
          Length = 1413

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 53/112 (47%)

Query: 1    LLKDAGLDNLNPVQTPLVQGQKLISEMGCPMXXXXXXXXXXXXXXXXSMTGPNISFGVQQ 60
            LL D G     P  TP     KL ++ G P                 + T P I+F  QQ
Sbjct: 1135 LLTDIGFLAAKPASTPSDPSCKLHADGGPPFSDIPSYRRLIGRLIYLTNTRPYITFATQQ 1194

Query: 61   VSQFIQNPYEGHLQAALHLLRYLRGTTNLGLFFPHSSPHTITAYYNADXATC 112
            +SQF+ +P E H  AA  +LRYL+ +   GLFFP  S   ++ Y +AD A C
Sbjct: 1195 LSQFLNSPTEKHYIAATRILRYLKKSPGQGLFFPRDSSLFLSGYSDADWAGC 1246


>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
            chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
            EGN_Mt090430 20090702
          Length = 1396

 Score = 65.9 bits (159), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 56/125 (44%), Gaps = 2/125 (1%)

Query: 1    LLKDAGLDNLNPVQTPLVQGQKLISEMGCPMXXXXXXXXXXXXXXXXSMTGPNISFGVQQ 60
            LL D+G     P  TP     KL  +   P                 + T P+I++  QQ
Sbjct: 1118 LLADSGTIGSKPASTPSDPSLKLHKDGALPYEDIPSYRRLIGRLLYLNTTRPDITYITQQ 1177

Query: 61   VSQFIQNPYEGHLQAALHLLRYLRGTTNLGLFFPHSSPHTITAYYNADXATC--TVTPLV 118
            +SQF+  P   H  AAL +LRYL+     GLFFP +SP  +  Y +AD A C  T   + 
Sbjct: 1178 LSQFLSAPTHTHHSAALRVLRYLKNCPGKGLFFPRNSPLQLQGYSDADWAGCLDTRRSIS 1237

Query: 119  SQCVL 123
             QC  
Sbjct: 1238 GQCFF 1242


>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
            chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
            EGN_Mt090430 20090702
          Length = 1414

 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 56/125 (44%), Gaps = 2/125 (1%)

Query: 1    LLKDAGLDNLNPVQTPLVQGQKLISEMGCPMXXXXXXXXXXXXXXXXSMTGPNISFGVQQ 60
            LL D G     P+ TP     KL  +   P                 + T P+I+F  QQ
Sbjct: 1144 LLADIGSLGSKPISTPSDSSIKLHLDSSSPFEDVPACRRLVGRLLYLNNTRPDITFITQQ 1203

Query: 61   VSQFIQNPYEGHLQAALHLLRYLRGTTNLGLFFPHSSPHTITAYYNADXATC--TVTPLV 118
            +SQF+  P + H  AAL +L+YL+     GLFFP SS   +  + +AD A C  T   + 
Sbjct: 1204 LSQFLSQPTQAHHSAALRVLKYLKSCPGKGLFFPRSSSLNLQGFSDADWAGCIDTRRSIS 1263

Query: 119  SQCVL 123
             QC  
Sbjct: 1264 GQCFF 1268


>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
           EGN_Mt090430 20090702
          Length = 710

 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 56/125 (44%), Gaps = 2/125 (1%)

Query: 1   LLKDAGLDNLNPVQTPLVQGQKLISEMGCPMXXXXXXXXXXXXXXXXSMTGPNISFGVQQ 60
           LL D GL +  PV TP     KL  +                     + T P+I+F  QQ
Sbjct: 485 LLSDTGLLDSKPVATPSDPSIKLYHDDSPLYTDIPAYRRLVGRLLYLNATRPDITFITQQ 544

Query: 61  VSQFIQNPYEGHLQAALHLLRYLRGTTNLGLFFPHSSPHTITAYYNADXATC--TVTPLV 118
           +SQF+  P + H  AAL +LRYL+     GL FP SS   I  Y +AD A C  T   + 
Sbjct: 545 LSQFLSKPTQTHYNAALRVLRYLKTCPGKGLHFPRSSLPYIQGYSDADWAGCRDTRRSIS 604

Query: 119 SQCVL 123
            QC  
Sbjct: 605 GQCFF 609


>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
           polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
           H EGN_Mt090430 20090702
          Length = 509

 Score = 63.2 bits (152), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 52/112 (46%)

Query: 1   LLKDAGLDNLNPVQTPLVQGQKLISEMGCPMXXXXXXXXXXXXXXXXSMTGPNISFGVQQ 60
           LL DAGL     V TPL     L  + G P                 + T P+ISF  QQ
Sbjct: 307 LLSDAGLTTCKSVSTPLDYACLLHIDDGPPFDDVLAYRCLIGCLLYLTTTRPDISFATQQ 366

Query: 61  VSQFIQNPYEGHLQAALHLLRYLRGTTNLGLFFPHSSPHTITAYYNADXATC 112
           +SQF+  P   H + AL +LRYL+     GLFFP +S   +  + +AD   C
Sbjct: 367 LSQFMAKPSVNHHRTALCVLRYLQVCPGRGLFFPRTSEMQLLGFSDADWGGC 418


>IMGA|Medtr4g157500.1 polyprotein-like, putative
           chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
           EGN_Mt090430 20090702
          Length = 260

 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 53/112 (47%)

Query: 1   LLKDAGLDNLNPVQTPLVQGQKLISEMGCPMXXXXXXXXXXXXXXXXSMTGPNISFGVQQ 60
           LL D+G  N  PV T      KL ++   P                 + T P+I+F  QQ
Sbjct: 75  LLSDSGTINSKPVSTSSDASLKLHNDSSPPYEDIPSYRRLIGRLLYLNSTRPDITFITQQ 134

Query: 61  VSQFIQNPYEGHLQAALHLLRYLRGTTNLGLFFPHSSPHTITAYYNADXATC 112
           +SQF+  P + H  AAL +L+YL+     GLFFP +S   +  + + D A C
Sbjct: 135 LSQFLSKPTQTHHNAALRVLKYLKCCPGKGLFFPRNSSLHLQGFSDVDWAGC 186


>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
           CU179634.6 87152-89450 H EGN_Mt090430 20090702
          Length = 688

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 50/92 (54%)

Query: 1   LLKDAGLDNLNPVQTPLVQGQKLISEMGCPMXXXXXXXXXXXXXXXXSMTGPNISFGVQQ 60
           LLK+   D++ P+ +PL    KL S  G  +                + T  ++++GVQ 
Sbjct: 587 LLKEFNCDHMAPLSSPLDPNIKLRSHEGKVLDDPTYYRKLIGKLNFLTHTRLDLAYGVQL 646

Query: 61  VSQFIQNPYEGHLQAALHLLRYLRGTTNLGLF 92
           +SQ++Q+P E HL AA H+LRYL+    LG+F
Sbjct: 647 LSQYMQDPREPHLHAAFHMLRYLKKDPTLGVF 678