Jatropha Genome Database

JcCA0308861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308861.10 + phase: 0 /partial
         (207 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g047330.1 Ribosomal protein L22/L17 chr01_pseudomolec...   254   2e-68
IMGA|Medtr1g047330.2 Ribosomal protein L22, bacterial and organe...   186   6e-48
IMGA|Medtr7g120590.1 Ribosomal protein L22, bacterial and organe...    59   2e-09

>IMGA|Medtr1g047330.1 Ribosomal protein L22/L17
           chr01_pseudomolecule_IMGAG_V3 11394054-11389061 E
           EGN_Mt090430 20090702
          Length = 326

 Score =  254 bits (649), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 129/201 (64%), Positives = 154/201 (76%), Gaps = 3/201 (1%)

Query: 1   GISSSRKLLAGSSEETPVHSPLTPALTPLSSGTTKEQRAVTKPSTVQAVLKGIKQSPKKL 60
           GISSS +LL  SSEE P+ SPL P     S G+++ Q    K   VQA+LK IKQSPKK+
Sbjct: 66  GISSSTQLLKNSSEEAPISSPLVPVS---SFGSSQGQEQNKKADKVQAILKKIKQSPKKV 122

Query: 61  NLVAALVRGMRVEDALLQLQLTIKRASKTVYQVIHSARANATHNHGLDPDRLLVAEAFVG 120
           NLVAALVRGM V+DALLQLQ+ +KRASKTVYQVIHSARANA+HNHGL+ DRL+VAEAFVG
Sbjct: 123 NLVAALVRGMLVKDALLQLQVLVKRASKTVYQVIHSARANASHNHGLNADRLIVAEAFVG 182

Query: 121 KGFFKKRTSYHAKGRAGIKVRPECRLXXXXXXXXXXXXAKIARLRVHNFRKLSKRERQLV 180
           KG FKKR S H KGR+GI  RPECRL            A+IARL+VHNF+KL+K+E +LV
Sbjct: 183 KGDFKKRVSIHGKGRSGIMHRPECRLTVVLREITPEEEAQIARLKVHNFKKLTKKEGRLV 242

Query: 181 PHKLIETTPIWNRKGKAAGRE 201
           PH+LIETTP+W RK K++ + 
Sbjct: 243 PHQLIETTPVWGRKNKSSSQN 263


>IMGA|Medtr1g047330.2 Ribosomal protein L22, bacterial and organelle
           form chr01_pseudomolecule_IMGAG_V3 11394054-11389061 E
           EGN_Mt090430 20090702
          Length = 195

 Score =  186 bits (473), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 88/134 (65%), Positives = 107/134 (79%)

Query: 70  MRVEDALLQLQLTIKRASKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKRTS 129
           M V+DALLQLQ+ +KRASKTVYQVIHSARANA+HNHGL+ DRL+VAEAFVGKG FKKR S
Sbjct: 1   MLVKDALLQLQVLVKRASKTVYQVIHSARANASHNHGLNADRLIVAEAFVGKGDFKKRVS 60

Query: 130 YHAKGRAGIKVRPECRLXXXXXXXXXXXXAKIARLRVHNFRKLSKRERQLVPHKLIETTP 189
            H KGR+GI  RPECRL            A+IARL+VHNF+KL+K+E +LVPH+LIETTP
Sbjct: 61  IHGKGRSGIMHRPECRLTVVLREITPEEEAQIARLKVHNFKKLTKKEGRLVPHQLIETTP 120

Query: 190 IWNRKGKAAGREPS 203
           +W RK K++ +  +
Sbjct: 121 VWGRKNKSSSQNET 134


>IMGA|Medtr7g120590.1 Ribosomal protein L22, bacterial and organelle
           form chr07_pseudomolecule_IMGAG_V3 28202235-28201108 F
           EGN_Mt090430 20090702
          Length = 198

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 57/99 (57%)

Query: 48  AVLKGIKQSPKKLNLVAALVRGMRVEDALLQLQLTIKRASKTVYQVIHSARANATHNHGL 107
           AV K I+ S  K   V   +RG   E+ L+ L+L   RA +T+ +++ SA ANA++N GL
Sbjct: 82  AVGKHIRMSADKARRVIDTIRGRPYEETLMILELMPYRACETILKIVFSAGANASNNLGL 141

Query: 108 DPDRLLVAEAFVGKGFFKKRTSYHAKGRAGIKVRPECRL 146
               L++++A V +G   KRT   A+GRA   ++  C +
Sbjct: 142 SKSSLVISKAEVNEGRTMKRTRPRAQGRANQILKRTCHI 180