Jatropha Genome Database

JcCA0308501.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308501.20 + phase: 0 /pseudo/partial
         (226 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g093310.1 hypothetical protein chr01_pseudomolecule_I...   174   3e-44
IMGA|Medtr1g093310.2 hypothetical protein chr01_pseudomolecule_I...    60   1e-09

>IMGA|Medtr1g093310.1 hypothetical protein
           chr01_pseudomolecule_IMGAG_V3 18932123-18928804 E
           EGN_Mt090430 20090702
          Length = 307

 Score =  174 bits (441), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 88/154 (57%), Positives = 105/154 (68%), Gaps = 9/154 (5%)

Query: 80  PSDYFKQLPRDLRLDLNDAAFDLSNGPVIDECGQELGELLLNLSRAWELADTSTSRDLAS 139
           P DYF + P DLRLDLNDAAFDLSNGPV+DECG+ELGE LLNLSRAWE+ADTS+SR L +
Sbjct: 84  PPDYFGKFPNDLRLDLNDAAFDLSNGPVLDECGKELGETLLNLSRAWEIADTSSSRSLVA 143

Query: 140 KLPMLE---------TFGKRLVSAGRRFQSMGQYGQGEMQKVAQAMIRTGKLLSANPIXX 190
           KLP++E           G+RLVSAG+RFQSMGQYGQGE QK+A+AMI  G+ LSA+    
Sbjct: 144 KLPLMEANLTGTAKSALGRRLVSAGKRFQSMGQYGQGETQKIAKAMIAAGRALSASSTSA 203

Query: 191 XXXXXXXXXXRVFKFWRTSGCSHSXESYIGAAIA 224
                     +  KF          ++ IGAAIA
Sbjct: 204 VIDKQPKEKNKTLKFGALQVEITPTKANIGAAIA 237


>IMGA|Medtr1g093310.2 hypothetical protein
           chr01_pseudomolecule_IMGAG_V3 18932123-18931258 E
           EGN_Mt090430 20090702
          Length = 122

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/31 (80%), Positives = 27/31 (87%)

Query: 80  PSDYFKQLPRDLRLDLNDAAFDLSNGPVIDE 110
           P DYF + P DLRLDLNDAAFDLSNGPV+DE
Sbjct: 84  PPDYFGKFPNDLRLDLNDAAFDLSNGPVLDE 114