Jatropha Genome Database

JcCA0308281.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308281.20 - phase: 0 
         (154 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g117430.1 hypothetical protein chr02_pseudomolecule_I...   159   5e-40

>IMGA|Medtr2g117430.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 27584345-27580846 E
           EGN_Mt090430 20090702
          Length = 154

 Score =  159 bits (402), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 78/153 (50%), Positives = 99/153 (64%), Gaps = 3/153 (1%)

Query: 1   MATSLTNKTSVTNQTLSLFRLSFNFIKSFXXXXXXXXXXXXXXXXXXXXXXXXXNLFEVA 60
           MA ++ +K + T Q  S+ + +F FI++                          N FEVA
Sbjct: 1   MANAMCSKIN-TLQNSSILKSTFTFIRTLSTSSPSPSSDAASETTKKSKRRKKKNFFEVA 59

Query: 61  QFLPNWGIGYHMAKSHWKNVSYEITKINLYKDGRHGKAWGIAYKDGAPAAETPKKISGVH 120
           QFLPNWGIGYHMAK+HWK VSYEITK+NLYKDG+HGKAWGIA+K+G P  + PKKISGVH
Sbjct: 60  QFLPNWGIGYHMAKTHWKEVSYEITKLNLYKDGKHGKAWGIAHKNGLPIVDAPKKISGVH 119

Query: 121 KRCWRYIPSLTNALSLESKPISSNSNETAPKAE 153
           KRCWRY+PS+  A   ES P  ++S ++  K E
Sbjct: 120 KRCWRYLPSVVKA--SESSPTLTSSTDSDLKVE 150