Jatropha Genome Database

JcCA0308071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308071.10 - phase: 2 /pseudo/partial
         (304 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g109760.1 GRAS transcription factor chr08_pseudomolec...    82   4e-16
IMGA|Medtr7g081070.1 Flagellar basal body rod protein; GRAS tran...    50   2e-06

>IMGA|Medtr8g109760.1 GRAS transcription factor
           chr08_pseudomolecule_IMGAG_V3 24691711-24693403 E
           EGN_Mt090430 20090702
          Length = 521

 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 55/78 (70%), Gaps = 2/78 (2%)

Query: 221 KPFEGESSIHVIDLGMSLGLPQGQQWRNLIHRLANNSSANPPKRLRITGVGNSGERLEAI 280
           + FEGES +HV+DLGMSLGLP G QWR LI  LA+ SS +  +RLRIT +G    R++ I
Sbjct: 254 EAFEGESFLHVVDLGMSLGLPHGHQWRGLIQSLADRSS-HRVRRLRITAIGLCIARIQVI 312

Query: 281 GNELECYARCMGFNNLEF 298
           G EL  YA+ +G  +LEF
Sbjct: 313 GEELSIYAKNLGI-HLEF 329


>IMGA|Medtr7g081070.1 Flagellar basal body rod protein; GRAS
           transcription factor chr07_pseudomolecule_IMGAG_V3
           17441430-17437591 E EGN_Mt090430 20090702
          Length = 805

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 223 FEGESSIHVIDLGMSLGLPQGQQWRNLIHRLANNSSANPPKRLRITGVGNSGERLEAIGN 282
           F+ E  +H+IDL +  GL    QW  L H LA  S    P  +R+TG+G S E LEA G 
Sbjct: 537 FDREERVHIIDLDIMQGL----QWPGLFHILA--SRPGGPPYVRLTGLGTSMETLEATGK 590

Query: 283 ELECYARCMGFNNLEFY 299
            L  +A  +G    EF+
Sbjct: 591 RLSDFASKLGL-PFEFF 606