Jatropha Genome Database
- JcCA0307901.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0307901.20 + phase: 0
(202 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr2g011060.1 DAG protein, chloroplast precursor, putativ... 114 4e-26
IMGA|Medtr1g090070.1 DAG protein, chloroplast precursor, related... 102 9e-23
IMGA|Medtr2g006280.1 hypothetical protein chr02_pseudomolecule_I... 79 2e-15
IMGA|Medtr2g006000.1 hypothetical protein chr02_pseudomolecule_I... 79 2e-15
IMGA|Medtr2g006330.1 hypothetical protein chr02_pseudomolecule_I... 57 7e-09
IMGA|Medtr2g006050.1 hypothetical protein chr02_pseudomolecule_I... 57 7e-09
IMGA|Medtr1g117240.1 RNA-binding region RNP-1 (RNA recognition m... 54 4e-08
>IMGA|Medtr2g011060.1 DAG protein, chloroplast precursor, putative
chr02_pseudomolecule_IMGAG_V3 2793800-2791012 E
EGN_Mt090430 20090702
Length = 221
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
Query: 61 ILEDCDYKHWLVVMEAPKE-YPLRDEIINRYVKTLAMALGSEEKAKESIYSVSTKYYYAF 119
+L CDY HWL+VME PK+ P RD++I+ Y++TLA LGS E+AK+++Y+ ST Y F
Sbjct: 69 MLPGCDYNHWLIVMEFPKDPAPSRDQMIDTYLQTLATVLGSMEEAKKNMYAFSTTTYTGF 128
Query: 120 GCNVSENLTYKIKSLPDVKWVLPDSYLCCGESSYGGEPFFDGEVVP 165
C V E + K K LP V WVLPDSY+ YGG+ + +GE++P
Sbjct: 129 QCTVDEATSEKFKGLPGVLWVLPDSYIDVKNMDYGGDKYINGEIIP 174
>IMGA|Medtr1g090070.1 DAG protein, chloroplast precursor, related
chr01_pseudomolecule_IMGAG_V3 18118240-18122435 E
EGN_Mt090430 20090702
Length = 235
Score = 102 bits (255), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 80/128 (62%), Gaps = 8/128 (6%)
Query: 45 NNSPVTPRTELT---RLPS----ILEDCDYKHWLVVMEAPK-EYPLRDEIINRYVKTLAM 96
N SP+ P + + R P+ + CDY HWL++++ P E + ++I+ YVKTLA
Sbjct: 71 NYSPLVPGSNTSFSDRPPAEMAPLFPGCDYNHWLIIIDKPGGEGATKQQMIDCYVKTLAQ 130
Query: 97 ALGSEEKAKESIYSVSTKYYYAFGCNVSENLTYKIKSLPDVKWVLPDSYLCCGESSYGGE 156
LGSEE+AK+ IY+VS + Y+ FGC + E + K++ +P V +VLPDSY+ YG E
Sbjct: 131 VLGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGIPGVLFVLPDSYVDPEHQDYGAE 190
Query: 157 PFFDGEVV 164
F +GE+V
Sbjct: 191 LFVNGEIV 198
>IMGA|Medtr2g006280.1 hypothetical protein
chr02_pseudomolecule_IMGAG_V3 598930-596286 E
EGN_Mt090430 20090702
Length = 489
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 61 ILEDCDYKHWLVVMEAPKE-YPLRDEIINRYVKTLAMALG-SEEKAKESIYSVSTKYYYA 118
+ E CDY HWL V + P++ P +E+I Y +T A L S E+AK+ IY+ ST Y
Sbjct: 118 LFEGCDYNHWLFVCDFPRDNKPPPEEMIRIYEETCAKGLNISVEEAKKKIYACSTTTYTG 177
Query: 119 FGCNVSENLTYKIKSLPDVKWVLPDSYLCCGESSYGGEPFFDGEVVP 165
F ++E + K + +P V +VLPDSY+ YGG+ + +G+++P
Sbjct: 178 FQAVMTEEESKKFEGIPGVIFVLPDSYIDPVNKQYGGDQYIEGQIIP 224
>IMGA|Medtr2g006000.1 hypothetical protein
chr02_pseudomolecule_IMGAG_V3 496892-494248 E
EGN_Mt090430 20090702
Length = 489
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 61 ILEDCDYKHWLVVMEAPKE-YPLRDEIINRYVKTLAMALG-SEEKAKESIYSVSTKYYYA 118
+ E CDY HWL V + P++ P +E+I Y +T A L S E+AK+ IY+ ST Y
Sbjct: 118 LFEGCDYNHWLFVCDFPRDNKPPPEEMIRIYEETCAKGLNISVEEAKKKIYACSTTTYTG 177
Query: 119 FGCNVSENLTYKIKSLPDVKWVLPDSYLCCGESSYGGEPFFDGEVVP 165
F ++E + K + +P V +VLPDSY+ YGG+ + +G+++P
Sbjct: 178 FQAVMTEEESKKFEGIPGVIFVLPDSYIDPVNKQYGGDQYIEGQIIP 224
>IMGA|Medtr2g006330.1 hypothetical protein
chr02_pseudomolecule_IMGAG_V3 609484-608462 E
EGN_Mt090430 20090702
Length = 188
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 63 EDCDYKHWLVVMEAPKE-YPLRDEIINRYVKTLAMALGSE-EKAKESIYSVSTKYYYAFG 120
E CDY HW +V + PK+ P +E+I Y +T A L E+AK+ IY+ T Y F
Sbjct: 85 EGCDYNHWFIVFDFPKDNKPTPEEMIRLYEETCAKGLNIRVEEAKKKIYACKTTTYPGFQ 144
Query: 121 CNVSENLTYKIKSLPDVKWVLPD 143
++E + K + +P V VLPD
Sbjct: 145 AVMTEEESKKFEGMPGVIHVLPD 167
>IMGA|Medtr2g006050.1 hypothetical protein
chr02_pseudomolecule_IMGAG_V3 507446-506424 E
EGN_Mt090430 20090702
Length = 188
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 63 EDCDYKHWLVVMEAPKE-YPLRDEIINRYVKTLAMALGSE-EKAKESIYSVSTKYYYAFG 120
E CDY HW +V + PK+ P +E+I Y +T A L E+AK+ IY+ T Y F
Sbjct: 85 EGCDYNHWFIVFDFPKDNKPTPEEMIRLYEETCAKGLNIRVEEAKKKIYACKTTTYPGFQ 144
Query: 121 CNVSENLTYKIKSLPDVKWVLPD 143
++E + K + +P V VLPD
Sbjct: 145 AVMTEEESKKFEGMPGVIHVLPD 167
>IMGA|Medtr1g117240.1 RNA-binding region RNP-1 (RNA recognition
motif) chr01_pseudomolecule_IMGAG_V3 25070611-25067460 F
EGN_Mt090430 20090702
Length = 284
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 43 VANNSPVTPRTELTRLPSILEDCDYKHWLVVMEAPK-EYPLRDEIINRYVKTLAMALGSE 101
+N P+T++ P + + KHW+V M+ P + +I++ Y + L +G+E
Sbjct: 59 ATSNQTSIPQTDMLLFP----NGNSKHWVVRMDKPAVGVVTKAQIVDHYAQILTKIMGNE 114
Query: 102 EKAKESIYSVSTKYYYAFGCNVSENLTYKIKSLPDVKWVLPDSYLCCGESSYGG 155
+ A+ IY VS K + F C + E+ +++ +P V V PD Y G
Sbjct: 115 KDAQMCIYHVSWKTNFGFCCELDEDCAHELSGVPGVLSVQPDDNFESENKDYEG 168